| New model in OGS2.0 | DPOGS200342 |
|---|---|
| Genomic Position | scaffold640:- 78203-78946 |
| See gene structure | |
| CDS Length | 498 |
| Paired RNAseq reads | 1501 |
| Single RNAseq reads | 5275 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005635 (2e-42) |
| Best Drosophila hit | SC35, isoform B (9e-39) |
| Best Human hit | serine/arginine-rich splicing factor 2 (8e-35) |
| Best NR hit (blastp) | serine/arginine rich splicing factor, putative [Pediculus humanus corporis] (2e-50) |
| Best NR hit (blastx) | putative Sr protein [Heliconius melpomene] (1e-44) |
| GeneOntology terms | GO:0005681 spliceosomal complex GO:0000398 nuclear mRNA splicing, via spliceosome GO:0003729 mRNA binding GO:0006376 mRNA splice site selection GO:0000785 chromatin GO:0035062 omega speckle GO:0016607 nuclear speck GO:0005515 protein binding GO:0005634 nucleus GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL12930 |
Nucleotide sequence:
ATGAGTTACGGAAGACCACCGCCGCGAATAGACGGCATGGTTTCTCTTAAAGTGGACAAT
CTAACATATAGGACTACACCAGATGATTTACGTCGCGTTTTCGAAAGGTGTGGTGATGTC
GGCGATATTTATATTCCAAGAGACAGATATACACGTGAAAGCAGAGGGTTTGCTTTTGTC
AGGTTCTTCGAAAGGCGCGATGCCGAGGAAGCACTAGATTCATTAGACGGAAGAATGTTA
GACGGCAGAGAATTGCGAGTTCAAATGGCCAGATATGGTAGACCATCTTCACCATACAGA
AGCCGCTACGACCGTCGTCGGAGCCACTCGCGTTCACGGTCTCGTTCACGTCGTCGCTCC
AGGTCCCGGTCCCGCCGCCGCTCGTACTCTCGCAGCCGGTCCCGCTCGCGCTCCCGATCC
CGCAGTCGCTCGGACTCCAAGAGCTCCCGCGGCAAGTCCCGCAGTCGCAGCCGCAGCCGC
TCTCGTTCAAGACATTGA
Protein sequence:
MSYGRPPPRIDGMVSLKVDNLTYRTTPDDLRRVFERCGDVGDIYIPRDRYTRESRGFAFV
RFFERRDAEEALDSLDGRMLDGRELRVQMARYGRPSSPYRSRYDRRRSHSRSRSRSRRRS
RSRSRRRSYSRSRSRSRSRSRSRSDSKSSRGKSRSRSRSRSRSRH