New model in OGS2.0 | DPOGS200344  |
---|---|
Genomic Position | scaffold640:- 70719-72239 |
See gene structure | |
CDS Length | 1065 |
Paired RNAseq reads   | 206 |
Single RNAseq reads   | 608 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA005639 (4e-56) |
Best Drosophila hit   | DNA fragmentation factor-related protein 4 (4e-45) |
Best Human hit | DNA fragmentation factor subunit beta (1e-39) |
Best NR hit (blastp)   | putative caspase-activated DNase [Heliconius melpomene] (1e-153) |
Best NR hit (blastx)   | putative caspase-activated DNase [Heliconius melpomene] (2e-147) |
GeneOntology terms    | GO:0004537 caspase-activated deoxyribonuclease activity GO:0006309 DNA fragmentation involved in apoptotic nuclear change GO:0005737 cytoplasm GO:0005634 nucleus GO:0005515 protein binding |
InterPro families    | IPR003508 Caspase-activated nuclease CIDE-N IPR015311 Apoptosis, DNA fragmentation factor 40kDa |
Orthology group | MCL12918 |
Nucleotide sequence:
ATGAAAAAAGGATATAAGGTGACCGATGTTAAAAGGGAGAAAAAAATTGGTGTCGCTGCT
GAGAACCTAGAGGAACTTATTGAGAAGTCCTGTAAAAAGTTAGGGTTCAATGTCAGCTGC
GCAGAGTGCCGTCTGTATGTGGCTGAGGACGGGACTCAGGTAGACGACGAGGACTATCTC
AGAACCTTAGCACCACAAACATTATTTATTCTGTTACAGGAAAATGAAACAATGGTTACT
GACTTTGACTACTTCTACAATATGATTTCTTCTGTCAAAAAGGATTACCTTAACACAGGG
AAGGCTGCTAAGGAATTTCTAAATGTCAATCTTAAAGAAAAATTTAAAGTACTTGAAAGA
TACATTTCAGCAGCTAACGATTCTAGGGCTATGATAAGTGAGAGGACTCAGGATCCAGAC
TGGTTTGAAGGTCTTGATTCAAGTGAGAAAACAAAAGAACAGTCAATGTCAAAAAGAGCC
AAGGAACGCATGAGGGGTTATTATTACAAAACTAAAACAGCATTACAGTCTTCGCAACTG
TATATACACACGAAAAACGGACAAAGCAAGAAACTCATAGACCTGTTCCTATTGGAATTA
CGTAGAAGACTTGAAAATAGTAAGTATAATGGGGATTACTTTAATAGGAAAGGTAGTGAA
GGTGTACGATTGTGCAACGAAAATGGTCTCTTTGAATGTGGAGGGCTATGGAATAATAAG
AAATGTATTTACGAAGGTGAACATGTGATCAATCCTTATAGAAGCCGCGAAGAAAGGATT
ATATTCCAAACTTGGAATTTAGATCACAAGATTGAGTTGTCTCGGTCCATCATACCGAAT
ATACAAGAGGCGATCAGGAATATTATTCATGCAAATGTAAAATGCGTGATGTGCAACGTA
AGTTCGGGTAAAGGTCACATAGAAATTGACCGATACTATTTACAAATATTCACTAGCGAT
AATCTAAAATTAGTTCATATAGTTTGTCATGATAAAGGCAAACACAGTGCTGAATCGAGT
GCTTACATTTTATGCCAAAAATGTTTTGGTAATTATAGAGTTTAA
Protein sequence:
MKKGYKVTDVKREKKIGVAAENLEELIEKSCKKLGFNVSCAECRLYVAEDGTQVDDEDYL
RTLAPQTLFILLQENETMVTDFDYFYNMISSVKKDYLNTGKAAKEFLNVNLKEKFKVLER
YISAANDSRAMISERTQDPDWFEGLDSSEKTKEQSMSKRAKERMRGYYYKTKTALQSSQL
YIHTKNGQSKKLIDLFLLELRRRLENSKYNGDYFNRKGSEGVRLCNENGLFECGGLWNNK
KCIYEGEHVINPYRSREERIIFQTWNLDHKIELSRSIIPNIQEAIRNIIHANVKCVMCNV
SSGKGHIEIDRYYLQIFTSDNLKLVHIVCHDKGKHSAESSAYILCQKCFGNYRV