| New model in OGS2.0 | DPOGS200346 |
|---|---|
| Genomic Position | scaffold640:- 57465-59669 |
| See gene structure | |
| CDS Length | 2205 |
| Paired RNAseq reads | 140 |
| Single RNAseq reads | 352 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005640 (0.0) |
| Best Drosophila hit | helicase 89B (4e-72) |
| Best Human hit | DNA excision repair protein ERCC-6 (1e-148) |
| Best NR hit (blastp) | putative DNA excision repair protein ERCC-6 [Heliconius melpomene] (0.0) |
| Best NR hit (blastx) | putative DNA excision repair protein ERCC-6 [Heliconius melpomene] (0.0) |
| GeneOntology terms | GO:0010332 response to gamma radiation GO:0010224 response to UV-B GO:0010165 response to X-ray GO:0006979 response to oxidative stress GO:0006283 transcription-coupled nucleotide-excision repair GO:0006290 pyrimidine dimer repair GO:0006281 DNA repair GO:0009411 response to UV GO:0000303 response to superoxide GO:0006974 response to DNA damage stimulus GO:0009636 response to toxin GO:0045494 photoreceptor cell maintenance GO:0008630 DNA damage response, signal transduction resulting in induction of apoptosis GO:0007257 activation of JUN kinase activity GO:0007256 activation of JNKK activity |
| InterPro families | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR000330 SNF2-related |
| Orthology group | MCL17624 |
Nucleotide sequence:
ATGGGTTTAGGGAAAACTGTCCAAGTAATAGCATTCTTAGCTGGGCTTTCTATGACTGAC
AGTGGGTCTTGGGGAGGTCTTGGTCCTTGTATAATTCTGTCTCCTGCCACAGTTATATAT
CAGTGGGTATCACACTTTCATTACTGGTTTCCACAAATAAGAGTTGCAGTTCTTCATCAC
TCAGGATCACATGCGGGAAGTCACCATAAGCTTATCCGTGACATGCACTCCTCACATGGC
ATTTTGCTAGTTACATACGCTGGCATTGTGAAATACATAAAAGATCTTTTATCAAGAAAA
TGGCATTACATAATTTTGGATGAGGGTCATAAAATAAGAAATCCAGACACCCAAGTCAGT
AAAATGGTGAAGAGGTTTGAAACATCTCATAAACTTCTAATTACAGGTTCCCCCATGCAG
AATAGTTTACAAGAATTATGGTCATTATTTGATTTTATGAGGCCTGGCCTATTAGGGAGT
CACACTGCTTTTATGGAGCATTTTGCTGTTCCTATTACCCAAGGGGGATATGCTAATGCT
AGTGAATTCCAAGAAGCTACTGCATTAGAAATTGCAAAGGCTCTTAAGAATCTTATCACT
CCATATATGTTGCGGAGAACAAAAACTGAAGTTCAGGATCACATTCAATTACCAGAAAAA
AATGAGCAAGTATTATTTTGTTCACTTACTCAGGAGCAAAAGGATTTGTACATGGGCTAT
CTTATGAGCAGTACCATCCGAAGCATATTAGACAAGGACAGTAAACATGGAGAACCAATG
AGAGCTAGGATACTTGTTGCATTATCAACTCTTAGAAAAATATGTAACCATCCTGACATA
TATCTCTATGAAGCTTATGAGGAGACTGATGATATTGATGAAAAATCTTTCGGTAATTGG
AAAAGATCTGGTAAAATGTCAGTGGTACATTCCTTGTTAAAAATATGGCTCAAGCAGGGA
CATAGGGCTTTAATTTTTACTCAATCAAGGGCAATGCTTTGCATTTTAGAACAACATTTG
CAAAACCACAGCTTTAAGTATTTAAGAATGGATGGTAGTGTTAATGTGGGTGTGAGGCAG
AATTTGATTAAAACATACAATGAAAATCCTGAATATTTGGTATTTTTAGCTACCACAAGA
GTTGGTGGTCTCGGTGTTAATTTAACGGGAGCTGATAGAGTTATAATATATGACCCTGAT
TGGAACCCAGCAACAGATAACCAGGCCAAAGAAAGAGCCTGGAGAATTGGCCAGGAGAGA
AATGTCACAGTTTACCGATTGTTGTCAGCCGGAACAATAGAAGAAAAAATATATCAAAGA
CAGATATTTAAGAATTTCTTAAGTAATAAAATATTAATAGATCCCAACCAAAAAAATGTA
TTAACAACTAGTAATTTGCAAAGTTTATTTAGCTTGGAGAATTTAAATTATGATGGAGAT
ACTGAAACTACTGCCCTTTTTAAGCATACTAAGGTAAATATCAATGGTAAAAAAAATTAC
AAAAGTGATTTGAGTAAAGGTATGTCTTATTCTAAGAAAAAAATAGAAGCCATGAAAAGA
CGAGCTAGAGAGATAAGTAAACAAATCAAAAAGTATGCAGAAGTAGGATCATCAGCACCA
AAGGATCCGAGACAGGCATATAAAGAAAAAAGAGATTTAATGTTAAATCCTCTACCAAAA
GAAGACGAACCGGAAATAAATATCGTTAATAATGAAATCACAAATGTGCCATTTGAACAT
GCTCTCTCTGAATCAGATATAGTTTATCAACATACAAAGAAGGATTATGAAAATAATTTA
ATAAAAGAAGCCTTAAGTTCAGCAATTGAAATTCAAGAAAAAAATGATGAAAAGGAGACA
GTAGAAGAAAATGTAGTTGCTGAAAATCCACCATTAGATTCAATTTCGATAGCAAATGAT
CTACAGACAAAAAAGGAAAGTAAAAAACGCCAATCATCCCCAGATACAAAAATTGATAAT
TTAGTTGCAATTAAAAAAGCGAAAATTGAGAAATCTAAAAAAGACGTCAAGCTCGGTGAT
GACGATTATGTTTTAAGTAAACTGTTTGCGAAGTCTGCTGTTAAAAATGCTTTACATCAT
GATGGAGTTGTTGGTTTGGCTGAAAAGGAAAAAAGACACAGAATTAAAGAAGATGCTATC
AAAGCTGCCAAAAAAGCCGTTAGGGCTATAAAATTTTCTTCTTAA
Protein sequence:
MGLGKTVQVIAFLAGLSMTDSGSWGGLGPCIILSPATVIYQWVSHFHYWFPQIRVAVLHH
SGSHAGSHHKLIRDMHSSHGILLVTYAGIVKYIKDLLSRKWHYIILDEGHKIRNPDTQVS
KMVKRFETSHKLLITGSPMQNSLQELWSLFDFMRPGLLGSHTAFMEHFAVPITQGGYANA
SEFQEATALEIAKALKNLITPYMLRRTKTEVQDHIQLPEKNEQVLFCSLTQEQKDLYMGY
LMSSTIRSILDKDSKHGEPMRARILVALSTLRKICNHPDIYLYEAYEETDDIDEKSFGNW
KRSGKMSVVHSLLKIWLKQGHRALIFTQSRAMLCILEQHLQNHSFKYLRMDGSVNVGVRQ
NLIKTYNENPEYLVFLATTRVGGLGVNLTGADRVIIYDPDWNPATDNQAKERAWRIGQER
NVTVYRLLSAGTIEEKIYQRQIFKNFLSNKILIDPNQKNVLTTSNLQSLFSLENLNYDGD
TETTALFKHTKVNINGKKNYKSDLSKGMSYSKKKIEAMKRRAREISKQIKKYAEVGSSAP
KDPRQAYKEKRDLMLNPLPKEDEPEINIVNNEITNVPFEHALSESDIVYQHTKKDYENNL
IKEALSSAIEIQEKNDEKETVEENVVAENPPLDSISIANDLQTKKESKKRQSSPDTKIDN
LVAIKKAKIEKSKKDVKLGDDDYVLSKLFAKSAVKNALHHDGVVGLAEKEKRHRIKEDAI
KAAKKAVRAIKFSS