| New model in OGS2.0 | DPOGS203809 |
|---|---|
| Genomic Position | scaffold120:+ 82896-88182 |
| See gene structure | |
| CDS Length | 1740 |
| Paired RNAseq reads | 50 |
| Single RNAseq reads | 116 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003716 (0.0) |
| Best Drosophila hit | nicotinic acetylcholine receptor beta 64B, isoform A (0.0) |
| Best Human hit | neuronal acetylcholine receptor subunit alpha-3 isoform 1 (2e-96) |
| Best NR hit (blastp) | nicotinic acetylcholine receptor subunit beta 1 isoform 1 [Bombyx mori] (0.0) |
| Best NR hit (blastx) | nicotinic acetylcholine receptor subunit beta 1 isoform 1 [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0004889 nicotinic acetylcholine-activated cation-selective channel activity GO:0005892 nicotinic acetylcholine-gated receptor-channel complex GO:0005887 integral to plasma membrane GO:0006811 ion transport GO:0045211 postsynaptic membrane |
| InterPro families | IPR006201 Neurotransmitter-gated ion-channel IPR018000 Neurotransmitter-gated ion-channel, conserved site IPR002394 Nicotinic acetylcholine receptor IPR006029 Neurotransmitter-gated ion-channel transmembrane domain IPR006202 Neurotransmitter-gated ion-channel ligand-binding |
| Orthology group | MCL16300 |
Nucleotide sequence:
ATGCATTCCACCAAAGAACTGCCTATCCAGTTTCTTGTCTTCTTCTTCCTGGCCTCTCAT
TCAGCGGCTCAATCTATGCTCTTCTATATACATGACTGCTGGAAGGGTGTAGGCTGTATA
GGTTTGGGCGCGGCACGGGAGGAATCGCGTTTGCCGCGTGCGGCAGTGACCGCCGCCATG
ACGGCTAGGTCGCGCGCTCCCTTACTCGTCGTCTTACTTTTAGCGGCACTATATTCAGGA
TGGTGTTCCGAAGACGAAGAACGACTTGTCCGAGATCTTTTCCGAGGTTACAACAAGCTC
ATACGACCCGTTCAGAATATGACACAGAAAGTGGACGTTAGATTCGGCCTCGCCTTTGTA
CAGCTCATTAACGTTAATGAAAAAAATCAAATAATGAAATCGAACGTATGGCTAAGGCTG
GTTTGGATGGATTACCAGCTGATGTGGGATGAGGCTGACTACGGCGGCATCGGTGTGCTG
CGGCTACCACCTGATAAGGTCTGGAAACCAGATATAGTGTTATTCAACAACGCCGACGGT
AATTACGAAGTGAGATACAAATCTAACGTGCTCATTTATCCAAACGGCGAGGTTCTTTGG
GTTCCACCGGCAATTTACCAAAGCTCGTGCACCATTGACGTCACATACTTTCCATTCGAT
CAGCAGACTTGCATAATGAAGTTCGGATCGTGGACATTCAACGGCGATCAAGTGTCACTT
GCACTCTACAACAATAAAAACTTTGTAGACCTCTCGGATTACTGGAAGTCGGGCACTTGG
GACATTATAGAAGTACCAGCTTATTTAAATATCTATGAGGGCAATCATCCGACTGAAACA
GACATCACTTTCTACATAATTATCCGAAGAAAGACATTATTTTATACCGTTAACTTAATC
TTGCCGACAGTTTTAATATCATTTCTCTGTGTACTTGTGTTCTACTTGCCCGCCGAGGCT
GGTGAAAAAGTGACATTGGGCATCAGTATTTTACTGTCACTGGTCGTGTTCCTGCTGCTT
GTTTCAAAAATTCTTCCTCCCACGTCCCTGGTTCTGCCGTTAATAGCAAAATATTTACTG
TTTACATTTATTATGAACACCGTCAGTATCCTCGTTACAGTAATCATAATCAACTGGAAC
TTTAGGGGACCTCGGACTCATAGAATGCCTCTCTGGATAAGGAGCGTCTTTTTACACTAC
TTACCAGCAGCTCTGCTTATGCGACGACCGCGCAAAACAAGGCTGCGTTGGATGATGGAA
ATGCCGGGAATGGGCGCTCCGCCACATCCAACAGCCACTCATGACTTGCCCAAACATATA
AGCTCAATTGGTTCTAAACAAGGTAAAATGGAGGCTATGGAACTTTCGGACTTACATCAT
CCCAACTGTAAAATAAACCGCGCGTCGGGTGGAGGCGAGGTGGGCGCGCTGGGAGGACTC
GGAGCGCTCGGCCTCGACAACCGAAGGGAATCCGAGAGTTCCGACTCACTACTCTTATCT
CCCGAAGCGGCCAAGGCCACGGAAGCTGTGGAATTCATCGCAGAACATTTACGGAATGAA
GATCTCTATATTCAAACTAGAGAAGATTGGAAATATGTGGCTATGGTCATAGATCGATTA
CAACTATACATATTCTTCATAGTGACCACAGCAGGGACCGTCGGTATATTAATGGACGCG
CCTCACATCTTTGAATATGTCGATCAAGACCGCATCATTGAAATATATAGAGGAAAATAA
Protein sequence:
MHSTKELPIQFLVFFFLASHSAAQSMLFYIHDCWKGVGCIGLGAAREESRLPRAAVTAAM
TARSRAPLLVVLLLAALYSGWCSEDEERLVRDLFRGYNKLIRPVQNMTQKVDVRFGLAFV
QLINVNEKNQIMKSNVWLRLVWMDYQLMWDEADYGGIGVLRLPPDKVWKPDIVLFNNADG
NYEVRYKSNVLIYPNGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSL
ALYNNKNFVDLSDYWKSGTWDIIEVPAYLNIYEGNHPTETDITFYIIIRRKTLFYTVNLI
LPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLL
FTFIMNTVSILVTVIIINWNFRGPRTHRMPLWIRSVFLHYLPAALLMRRPRKTRLRWMME
MPGMGAPPHPTATHDLPKHISSIGSKQGKMEAMELSDLHHPNCKINRASGGGEVGALGGL
GALGLDNRRESESSDSLLLSPEAAKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRL
QLYIFFIVTTAGTVGILMDAPHIFEYVDQDRIIEIYRGK