New model in OGS2.0 | DPOGS203811  |
---|---|
Genomic Position | scaffold120:+ 114540-116842 |
See gene structure | |
CDS Length | 1131 |
Paired RNAseq reads   | 822 |
Single RNAseq reads   | 3179 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003718 (3e-163) |
Best Drosophila hit   | TRAM, isoform C (2e-92) |
Best Human hit | translocating chain-associated membrane protein 1 (2e-57) |
Best NR hit (blastp)   | translocation associated membrane protein [Aedes aegypti] (1e-101) |
Best NR hit (blastx)   | translocation associated membrane protein [Aedes aegypti] (6e-99) |
GeneOntology terms    | GO:0005783 endoplasmic reticulum GO:0006614 SRP-dependent cotranslational protein targeting to membrane GO:0016021 integral to membrane GO:0006911 phagocytosis, engulfment GO:0005811 lipid particle |
InterPro families    | IPR006634 TRAM/LAG1/CLN8 homology domain IPR013599 TRAM1-like protein |
Orthology group | MCL14483 |
Nucleotide sequence:
ATGGGAATAAAACCTGCAATTGGCAGAAAATCTAACAAGAACCCCCCCGTTTTTAGTCAC
GAATTTATGATACAAAATCATGCCGATATTGTATCATGTGTTGTTATGGTGTTTTTAGTG
GGACTTATGGTCCAGTCAACAAGTCCAATTGCTAGTTTATTTATTGGCCTCCACCACAAC
GTTACTGGAGTGGAACCAACTCGCGACGCTCCAAAAGGTGAACCTTTCACATATGAAGCT
GGTTGGAAAGATGCAGGCGCTGTATTTTTTTACTCAATGGTTTGCATTGTATTCCATGCA
ATTATTCAAGAGTACTTCTTAGATAAAATTTCAAAGAAGTTCCACCTGTCCAAATCGAGA
CTGAGTGCTCTCAATGAGTCTGGACAGCTGATTGTGTTCCAATTGATGACTCTACTTTGG
GGTGGAGATGCCATACTCCGTGAAGGTTTCATATTCAATATCTCACAGCTGTGGGATGGA
TACCCTAACCACCCAATGAGTTTCCTCCTCAAGCTGTGGTGGGTGGTTCAAGCTGCGTAC
TGGATCCACACAGTTCCGGAACTCTACTTCCAAAGAATCAAAAAAGACGAGATGTCAAGT
CGTCTTATACAAGCGTCTGTCGCTTTCACCTTTATCATTGCTGCTTACTCCTTCAGATTC
CAGCGAGTAGGAGTTTGTCTGGTGGTGCTACATGCTTTATCTGAATTCGTAGCTCATGCC
CACCGCCTGAACAATATACTCAGGGGTGAAAAAGAGGATTACTTTAACAAATTGCTAAGC
TTGCTGAATGGAGTTTTGTTTGTGTCCGTCCGTCTATGTTCCTTAGTACTTGGTGTTCTC
ACCTTCTACTTTGGCCTCGCTGGTGTTGCCCCACTCCTACTCCGTGTTGGTGCTCTGTCT
GTACTAGTTACATTCCAGGTTTATTTGATGTTCAACTTCATCTCTGAAGCTATTAAGAGA
CGACAGGAATCCGCTCAATTGGCCCAAACCAGGCCAAAGAAGGAAAGAAAAGAGAAGCCT
AGGAAAGAGAAAGCTAAGAAGGTGCAAAGTGAAGAATCTGATCTACCCGAAGTTGATCAG
AACACAAACAAGACCATCCGACAGAGACAAACTGCTGTGAAGGCAAAGTAA
Protein sequence:
MGIKPAIGRKSNKNPPVFSHEFMIQNHADIVSCVVMVFLVGLMVQSTSPIASLFIGLHHN
VTGVEPTRDAPKGEPFTYEAGWKDAGAVFFYSMVCIVFHAIIQEYFLDKISKKFHLSKSR
LSALNESGQLIVFQLMTLLWGGDAILREGFIFNISQLWDGYPNHPMSFLLKLWWVVQAAY
WIHTVPELYFQRIKKDEMSSRLIQASVAFTFIIAAYSFRFQRVGVCLVVLHALSEFVAHA
HRLNNILRGEKEDYFNKLLSLLNGVLFVSVRLCSLVLGVLTFYFGLAGVAPLLLRVGALS
VLVTFQVYLMFNFISEAIKRRQESAQLAQTRPKKERKEKPRKEKAKKVQSEESDLPEVDQ
NTNKTIRQRQTAVKAK