| New model in OGS2.0 | DPOGS203821 |
|---|---|
| Genomic Position | scaffold120:+ 341091-343766 |
| See gene structure | |
| CDS Length | 1806 |
| Paired RNAseq reads | 39100 |
| Single RNAseq reads | 110454 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003469 (0.0) |
| Best Drosophila hit | polyA-binding protein, isoform G (0.0) |
| Best Human hit | polyadenylate-binding protein 4 isoform 3 (0.0) |
| Best NR hit (blastp) | poly A binding protein [Bombyx mori] (0.0) |
| Best NR hit (blastx) | poly A binding protein [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0000166 nucleotide binding GO:0003723 RNA binding |
| InterPro families | IPR000504 RNA recognition motif domain IPR002004 Polyadenylate-binding protein/Hyperplastic disc protein IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 IPR012677 Nucleotide-binding, alpha-beta plait IPR003954 RNA recognition motif domain, eukaryote |
| Orthology group | MCL10381 |
Nucleotide sequence:
ATGGCATCGCTATATGTCGGGGACTTGCACTCCGACATCACCGAGGCCATGTTGTTTGAA
AAATTTTCTCCTGCTGGTCCTGTTCTCTCTATTCGCGTATGCAGAGATATGATAACTCGT
AGGTCTCTTGGCTACGCTTACGTAAATTTTCAGCAGCCTTCTGATGCCGAAAGAGCACTA
GACACTATGAATTTTGATATGATCAAAGGTAGGCCAATTAGAATTATGTGGTCCCAAAGA
GATCCATCCCTCCGCAAATCTGGAGTTGGAAATGTTTTTATTAAAAATCTTGACAAAGCC
ATAGATAACAAGGCCATGTATGATACATTCTCTGCTTTTGGCAATATATTGAGTTGTAAG
GTAGCTCAAGATGAAAATGGGGCATCTAAGGGATATGGTTTTGTTCACTTTGAAACAGAA
GAAGCTGCTAATAAATCCATTGAAAAAGTAAATGGAATGTTGCTAAATGGAAAAAAGGTT
TACGTAGGCAGATTTATCCCTCGTAAGGAACGCGAAAAGGAACTGGGAGAGAAAGCTAAA
TTGTTCACTAATGTTTACGTCAAGAACTTCGGCGAAGATTTCTCGGATGAAATGCTAAGA
GATATGTTTGAAAAATATGGCAGAATAACTAGCCATAAAGTAATGTATAAAGAGGATGGC
TCATCCAGAGGTTTTGGTTTTGTAGCCTTTGAAGATCCAGATGCTGCCGAAAGGGCATGT
CTTGAGCTTAATGGCAAAGAACTTGTTGAAGGAAAACCTCTATATGTAGGACGTGCTCAG
AAGAAAGCTGAACGCCAAAAAGAACTAAAGCGTAAATTTGAGCAGTTAAAATCTGAACGT
TTGACTCGTTATCAAGGAGTTAATCTGTATGTGAAGAATTTGGATGACACAATTGATGAT
GAGAGACTCCGTAAGGAATTTGCACCATTTGGTACTATTACTTCAGCCAAGGTTATGTTG
GAAGATGGTCGTAGCAAAGGGTTTGGGTTTGTATGTTTCTCATCTCCTGAAGAAGCTACT
AAAGCTGTTACTGAAATGAATGGAAGAATTGTAGGTACTAAACCTCTTTATGTAGCTCTT
GCTCAAAGGAAAGAAGACCGCAAAGCTCATTTGACTTCACAATACATGCAACGCATGGCA
AGTATGAGAATGCAACAAATGGGTCAAATATTCCAACCAGGCAGTGCTGGAGGTTACTTC
GTCCCAACTATTCCCCCAGCCCAAAGATTCTATGGCCCTGCTCAAATTACTCAGATGAGA
CCTTCACAGAGATGGACTGCACAGCCTCCTGTAAGACCCAGCACTCAAACTGCTGCCTCA
GCATATCCAAACATGCAAGCACCATTTAGACCCACTACACGTGGACCAACTCAAACAGCT
TTGCGCACTTCTCTTGGAGCTAGACCTATAACAGGTCAACAGGGTGTAGCTGCAGCACCA
TCTATTCGTGCACCTCTTGTGCCAAGCGGTCGTACTGCTGGCTACAAATATACATCAACT
GTGCGCAACCCACCAGCTCCACAGCCAGCTGTTCACATCCAGGGTCAAGAGCCATTGACA
GCTTCCATGTTAGCTGCTGCACCACTTCAAGAACAAAAACAAATGCTTGGAGAACGTCTC
TTCCCTCTCATTCAGAGAATGCACCCTGATCTTGCTGGCAAAATTACTGGAATGCTTCTA
GAAATAGATAATTCTGAACTTTTACATATGTTAGAGCATGGAGAGTCTCTTAAAGCGAAG
GTTGATGAGGCTGTTGCTGTTTTGCAAGCTCACCAAGCTAAACAGCAAGCCACTAAGAAA
GATTAA
Protein sequence:
MASLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERAL
DTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCK
VAQDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAK
LFTNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERAC
LELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD
ERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL
AQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGSAGGYFVPTIPPAQRFYGPAQITQMR
PSQRWTAQPPVRPSTQTAASAYPNMQAPFRPTTRGPTQTALRTSLGARPITGQQGVAAAP
SIRAPLVPSGRTAGYKYTSTVRNPPAPQPAVHIQGQEPLTASMLAAAPLQEQKQMLGERL
FPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVLQAHQAKQQATKK
D