| New model in OGS2.0 | DPOGS205858 |
|---|---|
| Genomic Position | scaffold146:- 95389-99805 |
| See gene structure | |
| CDS Length | 1746 |
| Paired RNAseq reads | 994 |
| Single RNAseq reads | 2542 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009382 (2e-161) |
| Best Drosophila hit | ligatin (4e-56) |
| Best Human hit | ligatin (3e-59) |
| Best NR hit (blastp) | ligatin [Xenopus (Silurana) tropicalis] (1e-77) |
| Best NR hit (blastx) | PREDICTED: similar to ligatin isoform 3 [Canis familiaris] (8e-80) |
| GeneOntology terms | GO:0003743 translation initiation factor activity GO:0006413 translational initiation GO:0003723 RNA binding GO:0005575 cellular_component |
| InterPro families | IPR001950 Translation initiation factor SUI1 IPR015947 Pseudouridine synthase/archaeosine transglycosylase-like IPR003121 SWIB/MDM2 domain IPR002478 Pseudouridine synthase/archaeosine transglycosylase IPR004521 Uncharacterised conserved domain CHP00451 |
| Orthology group | MCL14217 |
Nucleotide sequence:
ATGTTCGCCAAACCATATAAATTAAAATCAAACAACACATTAAAAAACTCAGGGAAAAAA
CAACTTGCGCAACGTATACAGTATGAGTTTCCGGCAATTACTGAAGAAAAAGTCAAGGAA
TTGATTCCGAACAAGTCAAATGTTAGTTATATGGAGGTGGTGCTACACTCCGGTGACATT
GCAGGAGTGTACGTGGTGGACGGAGTACCAGTTATGATAGATCTCGGTGAAAGCTTGCTC
CCAACTGTCTGTGCTCTATGGAAAGCCCCAGATTTGGTGCCAATCATTTGTATACACACC
CCAGTTCTAAGTAAGATCCAAGGAGGGGCCCCTCTCTATGTTCCTGGTGTAAACACACAT
GGTCAGTTCCCCCAGTACCGTTCAGGGGCAGTAGTGGCCGCTTGCACAGGAGACAATGCT
GCTGCCTGTATTGTTGGACGAGCCACAATATCCTCTGCTGAACTATTGAGAGACAGAATG
GGTGTTTGTCTGGAAATCCTCCACGTATTTGGGGATCAACTGTGTAAAGAAAAGAAATTC
ATGAGAATAGAGAGACCCAAACTAGATCCAGCGAGCTACAATGTAACAGAACTATTGACA
AATGAGATCAACAAGTTAAACATTCAACCAGTGAAAGAGGAATGGCCAAGTCTCGTGAAG
GCGGAGTCTTCACCCATCAATGAACCTGCGGTCATAGCAGACTCAGGGCCTGAAACAATT
ACAAATGTGGCACAAGACGAGGAGAATAATGACCTCGACAATACAGCAGACTCAGAGCTG
TCACGTGAAGACTCCATCCCGAGTGATATGGACGGTCTCCTTCGTTGGTGTTTGCTTTCA
TTTCTGAAACTGGAGGCTAAACACATTGAACTGCCGCTGAAGACGAACTTACTATACAAG
AACCACCTCATGCCGCTGTGTCCGTCCGACCGAACCTTAGATGTTAAGAAGTCGAGCTTC
AAGAAGATGGGGAAGTTCCTGGAAGCCATGCAACGGGAAGGCCTCATCGAAGTGCGCGAG
ATAGAGAAGGGCGTGGACGCCCTAGTGTCCGTGGCGACCTCTCACCCCCTGGTGACGTCA
CACCGCGCGGTCAGGCCGAGGGCGGCGGAGGCGGGCGGTGGGGAGCGGGCCGCGGAGGAC
GACTACGTGCCGCCCACCATCAGGGAACTGTACTGTATCACGGCCAACGTCGTGGACCTG
TTCCAACCTCTCAAGAAGGGCACGCCGCTGTCGGCGGGCGAGGTCCGCGCCACGCTGACG
GAGTACATCAAGAGCCACGAGCTGGTCGCGCCACAGGCCCGCGGCTCGGTCGTACTGGAC
GGACTGCTCGCTAAGGTCACCGGGAAACGGCCGGAGGAGGTGATGAAGCGCGAGGAGGTG
ACGTCATGTGTCCTGGGGCGGATGACGGCCGCCACTGAGACGCGCTTCGCCGACGGCACT
CTGCGCCTCAGTAAGGTGCGCCTGCAACCAGTCAGCATGCAGGTCGTCATGCGCAGCGGA
AACAAGAAGGTGACCCTGGTGTCCAACCTGCAAGACTACGGTCTAGACCTGTCCTGCTTG
GCCCGCCAGTGGCAGGCCGGGGTGGGAGCGGCCTGCGGGGTCACGCGCTCAGCCGCCAGC
AAAAATGACCAACTCATGATACAGGGGGATCAGACTCATTTTGTGGCAAAGATGCTGATA
GAGAAGTATGGGCTGCCCAAGAAGTTCCTTGAGGGAGCCGACAAGGCCTTGAATAAGAAA
AAGTAA
Protein sequence:
MFAKPYKLKSNNTLKNSGKKQLAQRIQYEFPAITEEKVKELIPNKSNVSYMEVVLHSGDI
AGVYVVDGVPVMIDLGESLLPTVCALWKAPDLVPIICIHTPVLSKIQGGAPLYVPGVNTH
GQFPQYRSGAVVAACTGDNAAACIVGRATISSAELLRDRMGVCLEILHVFGDQLCKEKKF
MRIERPKLDPASYNVTELLTNEINKLNIQPVKEEWPSLVKAESSPINEPAVIADSGPETI
TNVAQDEENNDLDNTADSELSREDSIPSDMDGLLRWCLLSFLKLEAKHIELPLKTNLLYK
NHLMPLCPSDRTLDVKKSSFKKMGKFLEAMQREGLIEVREIEKGVDALVSVATSHPLVTS
HRAVRPRAAEAGGGERAAEDDYVPPTIRELYCITANVVDLFQPLKKGTPLSAGEVRATLT
EYIKSHELVAPQARGSVVLDGLLAKVTGKRPEEVMKREEVTSCVLGRMTAATETRFADGT
LRLSKVRLQPVSMQVVMRSGNKKVTLVSNLQDYGLDLSCLARQWQAGVGAACGVTRSAAS
KNDQLMIQGDQTHFVAKMLIEKYGLPKKFLEGADKALNKKK