New model in OGS2.0 | DPOGS205411  |
---|---|
Genomic Position | scaffold223:+ 6094-18195 |
See gene structure | |
CDS Length | 2394 |
Paired RNAseq reads   | 1242 |
Single RNAseq reads   | 3117 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001579 (0.0) |
Best Drosophila hit   | cap binding protein 80, isoform A (0.0) |
Best Human hit | nuclear cap-binding protein subunit 1 (0.0) |
Best NR hit (blastp)   | PREDICTED: similar to AGAP001195-PA [Tribolium castaneum] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to AGAP001195-PA [Tribolium castaneum] (0.0) |
GeneOntology terms    | GO:0000339 RNA cap binding GO:0005846 nuclear cap binding complex GO:0005634 nucleus GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005515 protein binding GO:0071013 catalytic step 2 spliceosome GO:0071011 precatalytic spliceosome GO:0035195 gene silencing by miRNA GO:0045071 negative regulation of viral genome replication GO:0030422 production of siRNA involved in RNA interference |
InterPro families    | IPR016024 Armadillo-type fold IPR003890 MIF4G-like, type 3 IPR015174 MIF4G-like, type 2 IPR015172 MIF4G-like, type 1 IPR016021 MIF4-like, type 1/2/3 |
Orthology group | MCL13471 |
Nucleotide sequence:
ATGAATCGTAGAAGGGCACATGAAGAAGAAGACGGTTATGAACGTCTGCATAGAAAACGC
CGGAGGGTTTCAGAAAATCAAGAAATTGAGGATAGATTAGAATCCCTTATTTTAAGAGTA
GGAGAGAAAAGTAGTTCTAGCTTAGAGAGCAATTTAGAAGGCTTGGCGAGTGTGTTGGAA
GCCGATTTGAGTACATTTAGAGTGAAAATATTACGTATTTTAACAGAATGTGCTATACGA
ATGCCAGAGAAATGTACTATTTATGCAACATTAGTTGGATTGCTAAACGCAAAAAATTAT
AACTTTGGTGGCGAATTTGTGGATTACATAGTCAAAACGTTTAAAGAAAATCTCAAAACT
GGTAAATGGAACGCAGCCCGTTATTGCTTGAGGTTTATAGCTGATCTAGTTAACTGTCAT
GTGTTGGCTGCTTCATCCCTATTGACATTGTTAGAAACATTGGTTGACTGTGCTAATGAA
GATGGTGTGCCACAAGTCCGACGTGATTGGTTTGTGTTTGCCGTACTTGCTACTTTGCCA
TGGGTTGGTAGAGAATTGTATGAAAAGAAAGAATCACAATTAGATCACTTGCTGGTAACC
ATAGAGGTGTTTTTAAACAAGAGAAGTAAAAAACATTGGCCAGCTCTAAAAGTATGGTCG
GCAGACTCACCGCATCTTCAAGAAGAATATTTGGATTGTTTGTGGGCTCAAATCAAAAAG
TTAAGACAGGATAACTGGTCAGAAAAACATATACCTAGGCCTTATCTTGCTTTCGATTCT
ATATTGTGTGAGGCCTTACAACACACACTACCTACAATTCAGCCTCCACCTCACAATGAT
GGCGACACATATCCAATGCCCCGAGTTATATTCCGTATGTTTGACTACACCGATTGTCCC
GACGGCCCTGTACTTCCAGGTGCCCACTCCATAGAAAGGTTCCTTATAGAGGAACACCTC
CATAATATCGTTGAAGCATACCATCTAGAGCGAAAGGAATGCGCCGCTCAACTCCTATGT
TTTCCGTATAAATCTAAAATCCCACTAGAGTACTGTATCGTTGAAGTTATATTTGCTGAG
CTGTTCAATTTGCCGAGACCGAGATATTTGGAGATATGTTATGGATCTATTCTAATTGAG
CTCTGTAAGCTGCAACCGTCCACGATGCCGCAAGTTTTGGCACAAGCTACTGAGATTCTT
TTCATGAGAATCGATACAATGAATATAGCATGTTTTGACAGATTAGTGAACTGGTTTTCG
TATCACTTGAGCAACTTCCAATATCGTTGGTCCTGGGAAGATTGGGAGGGATGCGCTCAG
CTAGACCCTGAACATCCTAAGCCGAGATTCATCAGGGAGGTGCTCGGCAAGTGTCTTAGG
TTGTCATATCATCAAAGGATCAAAGACATGACACCGGAATCGCTAGCAGCATACGTCCCT
CTCAAACCTGAACCCATTTACAAATATGCCATGGAAGGAGCGGCCTCTCTCCCAGGAACA
GAAGCTGCTCATCAATTAGTTGTGTGCGTCCGTAATAAATGTACGCCCGAAGAGGCGTTG
AACGTGCTCCGGGAACTACCGAACCCTTTACGCGAGGGTGAAGCCAACGCCGCTCATACA
GCCTACAACCCGCTCAAGATTGACGTATTTGTCCAAACTCTGCTAAACCTCGGCAGCAAG
AGCATCTCCCACAGCTTCGCCGCTATATCTAAGTTCCATTACGTTTTTAAGATCCTAGCG
GAGTCTGAAGAAGCCCAGATCTGTGTTCTTCGCAACGTTTGGGAGTTATGGCAGAGGCAC
AGTCAGATGGTGTGCGTTCTGGTCGATAAAATGTTGAAAACTCAGATCGTTGAATGCAGC
GCTGTCGCTACGTGGCTGTTCTCTAAGGAAATGGCGCCATACTTCACCCACGGATATCTA
TGGGAGATATTACATCTCACCATAGACAAGATGAACAAACACGTCTCCAAATTGAGCAAG
GAATTACAAGAAGCAAGGGAGGCGTTGGCGAGAGCCGATTCAAGCAGTTCCGAGTCAGAA
GACGAGAGCGGCAGCAAGAAGAAGAAAGACCAAGACAAACCCACGGAAGAGGCGGTGGAG
CGTATGGAGGAACGCCTGGAGATGGCGCACACGGACCAGAAGCGTCTGTTCCTGATAGTG
TTCCAGAGGTTCATCATGATTCTGTCCGAACACCTGGTGAGAGCCGACACCGACGCGAGG
GATCCCCACACCCACTGGTACAGGGCCACCCTCGCCCGGCTGCGACAGGTGTTCCTGCTT
CATCACGAACAGGTCCAGAAGTACAGCAGTACGTTGGAAACGCTTCTGTTCACTCAAGAC
CTGGACCCACACATTCTGGACGTCTTCCATCAATTCGTAGCTCTCACCGCATAA
Protein sequence:
MNRRRAHEEEDGYERLHRKRRRVSENQEIEDRLESLILRVGEKSSSSLESNLEGLASVLE
ADLSTFRVKILRILTECAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKT
GKWNAARYCLRFIADLVNCHVLAASSLLTLLETLVDCANEDGVPQVRRDWFVFAVLATLP
WVGRELYEKKESQLDHLLVTIEVFLNKRSKKHWPALKVWSADSPHLQEEYLDCLWAQIKK
LRQDNWSEKHIPRPYLAFDSILCEALQHTLPTIQPPPHNDGDTYPMPRVIFRMFDYTDCP
DGPVLPGAHSIERFLIEEHLHNIVEAYHLERKECAAQLLCFPYKSKIPLEYCIVEVIFAE
LFNLPRPRYLEICYGSILIELCKLQPSTMPQVLAQATEILFMRIDTMNIACFDRLVNWFS
YHLSNFQYRWSWEDWEGCAQLDPEHPKPRFIREVLGKCLRLSYHQRIKDMTPESLAAYVP
LKPEPIYKYAMEGAASLPGTEAAHQLVVCVRNKCTPEEALNVLRELPNPLREGEANAAHT
AYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICVLRNVWELWQRH
SQMVCVLVDKMLKTQIVECSAVATWLFSKEMAPYFTHGYLWEILHLTIDKMNKHVSKLSK
ELQEAREALARADSSSSESEDESGSKKKKDQDKPTEEAVERMEERLEMAHTDQKRLFLIV
FQRFIMILSEHLVRADTDARDPHTHWYRATLARLRQVFLLHHEQVQKYSSTLETLLFTQD
LDPHILDVFHQFVALTA