New model in OGS2.0 | DPOGS215205  |
---|---|
Genomic Position | scaffold8659:- 4995-10081 |
See gene structure | |
CDS Length | 1038 |
Paired RNAseq reads   | 5 |
Single RNAseq reads   | 21 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008712 (6e-146) |
Best Drosophila hit   | CG1126 (2e-70) |
Best Human hit | Bardet-Biedl syndrome 5 protein (4e-89) |
Best NR hit (blastp)   | PREDICTED: similar to Bardet-Biedl syndrome 5 [Tribolium castaneum] (2e-110) |
Best NR hit (blastx)   | PREDICTED: similar to Bardet-Biedl syndrome 5 [Tribolium castaneum] (1e-107) |
GeneOntology terms    | GO:0001947 heart looping GO:0032402 melanosome transport GO:0051877 pigment granule aggregation in cell center GO:0046907 intracellular transport GO:0070121 Kupffer's vesicle development GO:0003674 molecular_function GO:0042995 cell projection GO:0016020 membrane GO:0005886 plasma membrane GO:0005929 cilium |
InterPro families    | IPR014003 DM16 repeat IPR006606 Bardet-Biedl syndrome 5 protein |
Orthology group | MCL12427 |
Nucleotide sequence:
ATGCCGAAATCAAAACGAGGAATTGTTTGGGAAGACCGCGAAGTTCTTTTCGATCTGCCG
TTCTCATATCTCAAGCTGAGAACCGGCGAGAAAGTGTTCGATAGAATTGAACCGATAGAG
GATACGAAAGGAAACAGTGGCATGAAGGGCCGGCTGGTTGTTACCAACCTTAGAATAATC
TGGCACTCTCTCACCTCGCCCAGGATCAACTTAACCGTCGGTCTGAACTGCTTTATGTCC
ACAAGCACGAAGGTTGTGAACTCGGGTCTCCGTGGGACCACGCAGGCTCTATACATACTG
GCCGGTTACAACACGAACAAGTACGAATTCGTCTTCACCAATCTGGCGCCAAACTGCGTG
AGGCATTACACATCCGTTTCCGGCGTTCATAAAGCATATGCCTCTTCTCGTATGTACCGC
GACCTCAAGCTGAGAGGTGCGTTCATTCACAACAAGCAATTGAAAGTATTGCCACTAGAA
AAGATCTGTCTAACTGAAAACGGTATATGGAATTTATCCAGCGAATCTGGTAATTTGGGG
ACAATGGTAATAAGCAACGTACGGATAGTCTGGTACGCTGATATCAACGAATCATTTAAC
GTATCGATGCCGTACATCACTATAGAAAGTATTACGGTGAGAGATTCAAAGTTCGGTGAT
GCATTAGTCATAGCGACTCGCCCGTCTTGCGGCGGCTACGTGTTGGGGTTTAGAGCTGAA
CGACAGAGACTTCAGCCGCTATTGAGTGAATTACAAACGTTACACAACGCGTACACTGAC
GCGCCTGTATTCGGAGTTGAAATGTGCTGGGAGAGTGAGATATCCAAACCTCTACACGAT
GATATAAATGAATTGGAAGAAATCGGGGAGCCCCGCGGTGAGATGGGACCCTCGTTATAT
TTAGCGTCTCAACAGTCTCAACACAAAGACGACGCTGACGTACAACCCGTGTACAGCCAG
TACCTAGGGCTGGCCATAGAACCGTTAAAAGAAGGATTCACTTTACAAAGCCTTTTTGAA
GTTCAGACAGCGTCTTAA
Protein sequence:
MPKSKRGIVWEDREVLFDLPFSYLKLRTGEKVFDRIEPIEDTKGNSGMKGRLVVTNLRII
WHSLTSPRINLTVGLNCFMSTSTKVVNSGLRGTTQALYILAGYNTNKYEFVFTNLAPNCV
RHYTSVSGVHKAYASSRMYRDLKLRGAFIHNKQLKVLPLEKICLTENGIWNLSSESGNLG
TMVISNVRIVWYADINESFNVSMPYITIESITVRDSKFGDALVIATRPSCGGYVLGFRAE
RQRLQPLLSELQTLHNAYTDAPVFGVEMCWESEISKPLHDDINELEEIGEPRGEMGPSLY
LASQQSQHKDDADVQPVYSQYLGLAIEPLKEGFTLQSLFEVQTAS