| New model in OGS2.0 | DPOGS210730 |
|---|---|
| Genomic Position | scaffold314:+ 45485-57403 |
| See gene structure | |
| CDS Length | 2007 |
| Paired RNAseq reads | 5651 |
| Single RNAseq reads | 16910 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006260 (2e-44) |
| Best Drosophila hit | CG17838, isoform D (6e-178) |
| Best Human hit | heterogeneous nuclear ribonucleoprotein Q isoform 1 (5e-118) |
| Best NR hit (blastp) | GA27045 [Drosophila pseudoobscura pseudoobscura] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC000185 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0030530 heterogeneous nuclear ribonucleoprotein complex GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0003676 nucleic acid binding GO:0071011 precatalytic spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome |
| InterPro families | IPR006535 HnRNP R/Q splicing factor IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL11681 |
Nucleotide sequence:
ATGGCGGAAGGTAATGGAGAAATATCCATTGAAGAGGTCCCTGGGAAGGACTCCGATGCT
GGCCGGACACCAGATTACATCAAACTCATAGATTATGGCTTGGACCCAAAGGTGGCGACC
AAGCTCGACGACATTTATAAGACTGGAAAGCTAGCGCACGAGGAGCTGGACGAGCGTGCG
TTAGATGCCTTAAAAGAATTTCCATCCGACGGTGCTTTAAGTGTTCTTGGACAATTTTTA
GATTCAAATCTCGAGCATGTATCCAATAAGAGTGCTTTTTTATGTGGAGTCATGAAGACG
TACAGACAGAAAAGCCGTGCGGGCGTGCAGGGCGCGCCGGCGCTGGCGGCAGCTGTCCAG
GTCAAGGGGCCTGACGAGGAAAAGATCCGCCAGATCCTGCAGAGGACCGGTTACACGCTG
GACGTTACCACCGGCCAGCGCAAGTACGGCGGTCCGCCGCCTGGCTGGGAGGGCGGCACG
CCGGGCGCCGGCTGCGAGGTGTTCTGCGGGAAGATACCCAAGGATATGTACGAAGACGAG
CTGATACCTCTGTTCGAGAGTTGCGGCACCATCTGGGACCTGCGGCTCATGATGGACCCC
ATGTCGGGCGCCAACAGGGGGTACGCCTTCGTCACCTTCACCACCCGCGAGGCCACGCAG
CGAGCCGTGCAAGAGCATGTCATTAATATCCCCATCGACTTCGGCCATAAATATGCGGAG
TGTGACGTCGCGACGGCCCGGCGGCCGGCCCCGGGCGCGGCGCCGCGCGTATCTATGGCC
GGAGTCCCCACTGTAATCACTGATCTTGTGTACATGTGCAACGTAACACCCCTCGATAAT
CACGAAATAAAACCGGGGAAGACTCTGAGAATTAAGATTAGCGTACCGAACCTTCGACTT
TTCGTCGGCAACATTCCCAAGTCTAAAGGCAAAGAGGAGATACTGGAAGAGTTTGGTAAA
TTAACAGCCGGACTCGTTGAAGTCATTATATATAGTTCGCCCGATGACAAGAAGAAAAAT
AGAGGATTTTGTTTTTTGGAATACGAGTCTCACAAAGCGGCGTCACTAGCCAAGCGTCGG
CTGGGCACCGGCAGGATTAAAGTTTGGGGCTGTGATATTATAGTGGACTGGGCGGACCCG
CAGGAGGAACCCGACGAGCAGACCATGAGCAAAGTGAAGGTGTTGTACGTTCGGAACCTG
ACCCAAGAAATCACAGAAGAAGCGCTTAAAGAAGAATTCGAACGTTATGGAAATGTAGAA
CGAGTTAAGAAAATTAAGGATTACGCTTTCGTACACTTCGAAGACCGGGATTGTGCCGTT
AAGGCGATGCAGGAGATAGACGGCAAGGAGCTGGGTGGAGCCCGCCTCGAGGTGTCGCTG
GCCAAGCCACCCTCGGACAAGAAGAAGAAGGAGGAGATACTGAGGGCGAGGGAGAGACGC
ATGACGCAGATGATATACGGACGGGGCGGATTTGATTGGTGCAGCTGCTCGCCGGTGCAC
GGGGCGCTCCGGGGCCGCACGCCGCAGCCGCAGCCGCGCCCGCCGCAGGCCCGCGGGGAC
TACGATTATGATTACGACTATTACGGGTACGGGGATTACCGAGGTGGCTACAATGAGCCA
TTTTACCGGTACGATGAGTTCTATTTTGATTACGCGGGGCCACCGCAACCGTCCGCCGTC
CGCCAGCCTCCCAACAGAGCGCAGCCGGGGGCTGGGTCATGTGGGACGGGCGCGCGCTGG
GGGCGGCGCGGGGCCGCGGCTGGGGCCCGTGGTGGTGCGCGCCGCGCCGCTCGTGGCCGC
CGCACGCCCAGCGGCATGCGTGGCAACCCGCGCGCCAAGCCAAGTTTACCAGGTAAACGT
AAACTCGACGGGGGTCAGCAGATCGCTGGGGGGGAGCGGGAGAGCAAGCGGCGACTGGGC
GCGGCGGCGGCGGCGGCGCGCGGCTGGGGGTCGGCGGGGGTAGGATCGATGGGGTCCATG
GGGTCCGAAGGTGCCGCCGCCAGCTAG
Protein sequence:
MAEGNGEISIEEVPGKDSDAGRTPDYIKLIDYGLDPKVATKLDDIYKTGKLAHEELDERA
LDALKEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYRQKSRAGVQGAPALAAAVQ
VKGPDEEKIRQILQRTGYTLDVTTGQRKYGGPPPGWEGGTPGAGCEVFCGKIPKDMYEDE
LIPLFESCGTIWDLRLMMDPMSGANRGYAFVTFTTREATQRAVQEHVINIPIDFGHKYAE
CDVATARRPAPGAAPRVSMAGVPTVITDLVYMCNVTPLDNHEIKPGKTLRIKISVPNLRL
FVGNIPKSKGKEEILEEFGKLTAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRR
LGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQEITEEALKEEFERYGNVE
RVKKIKDYAFVHFEDRDCAVKAMQEIDGKELGGARLEVSLAKPPSDKKKKEEILRARERR
MTQMIYGRGGFDWCSCSPVHGALRGRTPQPQPRPPQARGDYDYDYDYYGYGDYRGGYNEP
FYRYDEFYFDYAGPPQPSAVRQPPNRAQPGAGSCGTGARWGRRGAAAGARGGARRAARGR
RTPSGMRGNPRAKPSLPGKRKLDGGQQIAGGERESKRRLGAAAAAARGWGSAGVGSMGSM
GSEGAAAS