| New model in OGS2.0 | DPOGS213101 |
|---|---|
| Genomic Position | scaffold1526:- 34590-38925 |
| See gene structure | |
| CDS Length | 2424 |
| Paired RNAseq reads | 228 |
| Single RNAseq reads | 640 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007861 (7e-09) |
| Best Drosophila hit | ND |
| Best Human hit | collagen alpha-1(V) chain preproprotein (7e-22) |
| Best NR hit (blastp) | PREDICTED: similar to Collagen alpha-1(XI) chain precursor isoform 1 [Apis mellifera] (1e-131) |
| Best NR hit (blastx) | PREDICTED: similar to Collagen alpha-1(XI) chain precursor isoform 1 [Apis mellifera] (4e-45) |
| GeneOntology terms | GO:0005581 collagen GO:0006029 proteoglycan metabolic process GO:0031012 extracellular matrix GO:0002063 chondrocyte development GO:0003007 heart morphogenesis GO:0048704 embryonic skeletal system morphogenesis GO:0055010 ventricular cardiac muscle tissue morphogenesis GO:0042472 inner ear morphogenesis GO:0005201 extracellular matrix structural constituent GO:0030199 collagen fibril organization GO:0001502 cartilage condensation |
| InterPro families | IPR000885 Fibrillar collagen, C-terminal IPR008160 Collagen triple helix repeat |
| Orthology group | MCL10248 |
Nucleotide sequence:
ATGAATATCCCACTTTGCGGGACTCCGGGACAAGCTGGACCTCCAGGCTTACCTGGACCC
CCTGGATCTAACGGTGAACCAGGTCCACCTGGTCTACAAGGACCGTCTGGTATGTCAGGA
GCACCTGGTGAGGTGGGTCCACCGGGAGATTCAGGAAAAGAAGGACACCCGGGACCACCA
GGACCGGAGGGAAAACCAGGCCCTCTGGGACCTCCAGGATCACCTGGCGCAAACGGAGAG
CCAGGTTTACCTGGGGCCCCCGGAATTCCTGGAAGTAAAGGTGACATGGGTCCACCAGGA
CAAGCAGGCGTAAGAGGTGAGAAAGGAGAACAAGGAGAACCTGGACGTGAAGGTTTACAA
GGACTTATTGGCCGAGATGGGCCAAGAGGATCTCCTGGACCAGGAGGTCAAAAAGGAGAA
GTTGGCGAACCTGGTCCTATAGGTCCTGTTGGCCGTGATGGTCTACCAGGTCCACGGGGC
CTCTCTGGGGTCCCTGGACCTATTGGACCTCCAGGAGAAGATGGTGACAAAGGTGAATCC
GGTCCACCTGGAGAAAAAGGTTTCAAAGGCGCAATGGGGCAACCCGGCCCATCGGGTGCT
CCAGGAATTCAAGGTCTTAGAGGAGAACCTGGACCAGTGGGTTTACCTGGTGATAAAGGA
CCCCCGGGCGATATTGGTCCACCTGGACCGGCGGGAACTGATGGCACACGTGGGCCTCCG
GGACTTATCGGTAAAATTGGGCCCGAAGGTCCAAAAGGTGATCAGGGTTCAAAAGGAGAT
AGTGGAGAAGTCGGACCTATAGGTCCCCCTGGACCCGCTGGTCCTACTGGATCTGTTGGA
AGGAGGGGTCCAAAAGGAAATCAAGGTGAACAAGGTCCTAGAGGTCCGGAAGGAGAAAGA
GGGGAAATAGGAAGCCCGGGATCGACAGGTCCGCAAGGACCACAAGGATCTGAAGGAAAA
GTGGGACCACGAGGATACGCAGGACCAAAAGGTGATGATGGTTTACCGGGACCTCCAGGT
GAAGCAGGTGCTAAAGGACTTCCCGGTCCCGAAGGCGCCAAAGGTGACACTGGACCGTCT
GGCTTCCCTGGAGATAGGGGAGAACCTGGTCCACAAGGAGTCAAGGGTGAACCTGGTACT
GATGGTCCAGAAGGAAGCCCGGGACCCCCAGGTTCACCTGGACCAATAGGACCTATTGGA
AAACCAGGTGAAACTGGTATTCCAGGAAGTCCTGGCACCGAGGGGCAACCTGGTATACAA
GGAAATCCTGGAAATCCTGGTGAAAAGGGTAATATGGGTCCTAGGGGACTTCAAGGGGAA
CAAGGTCCACCAGGAGCAATTGGTCCTGTTGGACCAGAAGGACCCCCTGGTTTAAGGGGA
CTGGCTGGACCAACTGGAGATGTTGGAGCACCTGGTGTTATGGGACCAATGGGTGTACCA
GGACCTAGCGGATCCCCCGGCCAACAAGGAATAAAAGGAGAAAAGGGGAATAGGGGAGCG
AAAGGTCATACTGGTGATACGGGAAATATTGGAATTAAAGGAGACCAAGGCGAAATTGGA
AAACAGGGACCAACAGGTCCAATAGGTCCTATGGGGCCAAAAGGAGACACAGGTCCAATT
GGGCCTCCCGGATCCAAAGGAGATGTAGGACCGGCTGGGCTGGCTGGACTTGAGGGACCT
CTGGGCCCAAAAGGCACGGCAGGACCTGAAGGTCGCCCCGGTCTACCCGGCCCTCCCGGT
GCTCCAGGACCTCCAGGTCCTCCCGCGCCAATCCCTCAGCTACCTTCTGATCTGTTCATG
TCCAGTAGACGAAGGCGAAGTATTGAAACTGAATCTACGGAAACCGCTACTGAAGATAGT
TATGAAGAAGAGGAAATCGAATGGACTCGTGAGATAATGGCTGGCGTATTAGCAGCTCGA
GGAACGCTGGATGCGGCCCGCCGACCGCGTGGTACTCGCTCCAACCCAGCGCTGTCATGC
AGGGACTTACGAACATCTCATGCTAATTTAACTGATGGTTTCTACTGGATAGATGCTCGT
GGGGGTTCTGGACGTCCTATTAAAGTGTTTTGCGATGGCCAAAGCACCTGTTTGTACCCG
GAAAATGTCGATGCTGCAGCTGTGTATTTCGATATATCAGGACAGAAGTTCTCACAGCTT
GATGGAGGATATCGGATAAATTACGACAGCGAAGGTTCCGGCTTCATACAAATGCGGTTC
TTACGATTGCTATCAACTGGTGCAAGACAAAATTTCACTTACACGTGTGTCAAAACAGTT
GCACCACAAAGATCCGATATTCCCGTGGATCTCATAAAAAACAAAAAAATTAAGTTGTTG
GGTCAAAACAATTTTGAGTTTAAGGAGCCCCAGATAATAAAGGATGATTGCAAGGTAAAA
TTTTCGACGCCATTACTAAAATAG
Protein sequence: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