New model in OGS2.0 | DPOGS201133  |
---|---|
Genomic Position | scaffold73:- 133959-153369 |
See gene structure | |
CDS Length | 2646 |
Paired RNAseq reads   | 4951 |
Single RNAseq reads   | 11322 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003937 (3e-172) |
Best Drosophila hit   | prominin-like, isoform A (3e-41) |
Best Human hit | prominin-1 isoform 7 (1e-21) |
Best NR hit (blastp)   | PREDICTED: similar to Prominin-like protein [Apis mellifera] (3e-156) |
Best NR hit (blastx)   | PREDICTED: similar to prominin (prom) protein [Nasonia vitripennis] (2e-131) |
GeneOntology terms    | GO:0005886 plasma membrane GO:0016021 integral to membrane |
InterPro families   | IPR008795 Prominin |
Orthology group | MCL10370 |
Nucleotide sequence:
ATGCGGATGTCGGAGGTGAACTACTCCAAACCGATCATCAACGTGACTTACATGGCGCGG
GTGGAGGTAGACATGCGGGCCATGGGACACCTGTACAACTCCACTTACACCATCATAGAC
TTCATCGCTAACAAACAGGCGTATCCTGAAGGTATCGTGTCGGTGTCTGACGGACATGTG
GAGCTGGCGTCTCCTCGCTCGGAGTGGAGGTCTCTGCTGGCTCACTACGCGGGTCCCTTG
GCCGTGGCTGTGCTCGTCATACTGTTCGCTGCCGTGCTGCCGCTCTCAGGGTTGTTCTGG
TGCTGCTGTCAGTGGTGCAGGGTCGGGCGGCGGCGGCGGCCGTTCGACCGCAAGTATGAC
GCCTGTCTCAAGGGGATCCTCGCAATAGTTTTCATCGGACTGCTGACGCTGTTCTTGTTT
GGCGTGGTCTGTGCCTTCGTCACCGACTCGCAGATGGAGACGGGCGCGAGCGCCGCTCCG
AATGTCGTCCGTGCGGCAGTGAGGGACGCACGCACTTTCCTTGACGCCAGCGCTGGTCAC
GCGCGACACCTTCTCGTCGATAACTTCCGTGAACTGGAGACTCAGCTGGATCGCTCCTTG
GCGGCGGGCGGCGCGGTGGTCCTGCGACAACTAGACGAGTTCACCAACGCGACGTCGGTG
CGCCGCCTCGAGCTGGTTGCTTCTACGCTAGAACGTGTACCCGATGAGCTGCGCCGTGTG
CAAGCCGCAACGGCCGCCCTGCGCGCCGGCGCTGACTCACTCGACGAGGGCCTGCGCCGC
GTCAAAGCCTCGCTGTTCAACACGTTAGCACGCTGCCAGGAGCCTCAGTGCGTCACTCTA
CAGGAAAAATACAAGATCGGCCAACTCTACACCGACATTCAGTACGACAAGATACCGGAC
GTGTCGGAGCTGCTGGACAACGTGTCTCGCCTGGTGGACGGCGACATGGTCCGGGATGTG
CGCGCCGGCCTCCAAGTGTTCACAGGGATCCGTCGTACCGTGGATCAGCACGCGCCACGC
GTCAGGGAGGCCGTCGCTGCGACCGGGGAACGACTCGCCAGGGTAGCGGACGAAGTGTCC
TGGGCGGCCGGCAACCTCAGCGAGCGGCTGCGGACCTCCCATGCCCCTGACGTACTACAA
GAACACTTGCGACAGTACGGGCCGTACGTGCGACATCCCACCAGAGCTGTAGCCGCGGCG
CTGTTGGCGATCGTGGTGGTGATGTCGTGGGGCCTGGTGTGCGGCGTGTGCGGGAAGCGT
CCCGACGTTTACGGTGCTAGCGACTGCTGCAACAAGGGCTCTGGAGCGTCTTGTATCACA
TGCGGAATGGCGCTGACATTCGCAGTGGGCGGAGTGGCCGCGGTGGCGATGCTTGTTTAC
TTCATATTCGGAATCGCAGCGCAAAGACTCGTGTGTGACCCGCTGTCCGAGCCTCGCGGG
AGTCGCGTGTTCGTAGACGTCGAGCGGTTCGTGGAGCTAGAGCGATCGCTATATAACGAG
CGCTCCGACCCCGACTTCAATCTCACATCAGTGCTGGTGGACTGTCACGCCAACCGCACC
ATATACCACACGTTGCGTTTGCGTCGCGCCTTCGACCTGGAGTCAGTTCGTGACCGCGTG
TCCTCGGACGTGTCGTCGCGTGTGTCGTCTCTCCGGACCGACTACCCTCCCCGCGGTCGC
CCGCTGCGTATCCTGGCGCCGGCCGCCCGCGCTCGCCTCGACCGCCTCGCCGCTTCCGGC
CTGTCCGACTTCGACTTCGACCGTATCCTGGGCGCTCTCGAGACCAACGTGACGTCACTG
TCCCTGGAGGCCCTCGCGACCCAGCTGCGCTCTACGTCCCGCGCGCTGCAGTCCCGCCCC
GGCTTCCGGACCGTGGCCGGAGAGCTGACCGCCGCCGCCGATGACGTGTCCTCGCTGCAC
CGGGACGTCGTCGGACCCATGCTCGAGCGTACCAAAGAACTCAACAAAACGGCTTCCGAA
CTCCGCGACGCCCTCCGATTCAACGAGTCCTCGCTAAGGGAGGCCATCCTGTCGTGCGTG
AGGGACACCAACGAGGTGGAGCTGTTCTTGAACACTCAGGGGCCCGACCTCGTCCAGAAC
CTGACGCGTGAGTTCGCGGAGACCCTGGGCGAGCGTCTCCAGCAGTACTTGTCGATGGTG
GCGCGGGCGGCGGAGCGGGACGTGGGCCGGTGCGGGCCGCTGAGCAACGCCTTCAACGCA
ACACGTGACGCCGCCTGCCGAGCCTTCGTGCTCCCCGCGAACGGCTACTGGGTGTCGGTG
TGTTGGTGCGCCCTGTTGATGCCCGTGGTGCTGTGTGTGAGCGCGCGCCTCGCCCGTCTG
TATCGCCGCGCCGAGCCCTACCCCGGGCCGCTCGTCGAGGCCGAGTATTTGTATGACGCG
TACACGGACCGCGATAACGTTCCCCTCGCCAACGGCTCCAAGAGAAGCACCCTCGACCTG
GAGGGGAAGATCGCCGAGTGGAGAGGGAGCGGGGGAGCTACAGCCGATGGGGCGGGGGGG
ACGGGCACGAGGACGCAGGTGGTGCTGGAGGGGAGGGAGGTAGTCTGTCAGCTGATAGAC
GACCTCAAGACACGCCTTGACGCCAAAGACGAGGACAACGAGTCCGGCATACACGAGGCA
GAGTAG
Protein sequence:
MRMSEVNYSKPIINVTYMARVEVDMRAMGHLYNSTYTIIDFIANKQAYPEGIVSVSDGHV
ELASPRSEWRSLLAHYAGPLAVAVLVILFAAVLPLSGLFWCCCQWCRVGRRRRPFDRKYD
ACLKGILAIVFIGLLTLFLFGVVCAFVTDSQMETGASAAPNVVRAAVRDARTFLDASAGH
ARHLLVDNFRELETQLDRSLAAGGAVVLRQLDEFTNATSVRRLELVASTLERVPDELRRV
QAATAALRAGADSLDEGLRRVKASLFNTLARCQEPQCVTLQEKYKIGQLYTDIQYDKIPD
VSELLDNVSRLVDGDMVRDVRAGLQVFTGIRRTVDQHAPRVREAVAATGERLARVADEVS
WAAGNLSERLRTSHAPDVLQEHLRQYGPYVRHPTRAVAAALLAIVVVMSWGLVCGVCGKR
PDVYGASDCCNKGSGASCITCGMALTFAVGGVAAVAMLVYFIFGIAAQRLVCDPLSEPRG
SRVFVDVERFVELERSLYNERSDPDFNLTSVLVDCHANRTIYHTLRLRRAFDLESVRDRV
SSDVSSRVSSLRTDYPPRGRPLRILAPAARARLDRLAASGLSDFDFDRILGALETNVTSL
SLEALATQLRSTSRALQSRPGFRTVAGELTAAADDVSSLHRDVVGPMLERTKELNKTASE
LRDALRFNESSLREAILSCVRDTNEVELFLNTQGPDLVQNLTREFAETLGERLQQYLSMV
ARAAERDVGRCGPLSNAFNATRDAACRAFVLPANGYWVSVCWCALLMPVVLCVSARLARL
YRRAEPYPGPLVEAEYLYDAYTDRDNVPLANGSKRSTLDLEGKIAEWRGSGGATADGAGG
TGTRTQVVLEGREVVCQLIDDLKTRLDAKDEDNESGIHEAE