| New model in OGS2.0 | DPOGS201164 |
|---|---|
| Genomic Position | scaffold73:+ 170131-174879 |
| See gene structure | |
| CDS Length | 1827 |
| Paired RNAseq reads | 1545 |
| Single RNAseq reads | 3654 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003961 (0.0) |
| Best Drosophila hit | CG4673, isoform D (3e-149) |
| Best Human hit | nuclear protein localization protein 4 homolog (2e-122) |
| Best NR hit (blastp) | PREDICTED: similar to nuclear protein localization [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to nuclear protein localization [Tribolium castaneum] (5e-174) |
| GeneOntology terms | GO:0017056 structural constituent of nuclear pore GO:0005643 nuclear pore GO:0008270 zinc ion binding |
| InterPro families | IPR007717 NPL4 IPR007716 NPL4, zinc-binding putative |
| Orthology group | MCL13432 |
Nucleotide sequence:
ATGTCAGGAACAAAAAAAATGACGCTACGGGTCCAGTCGTCGGAGGGCACAGCCCGCGTG
GAGATGCTGGACACCGAGGTCACATCGCGCCTCTACGAGCGAGTCCACGACACTCTCAAC
TTGAACTCATTCGGCTTCGCTTTACATAAAGACCGCGCGCGTAAACAAGAAATTTCGTCT
AGTAAATCTCGTCAACTCCGAGAGTACGGTCTGCAACATGGAGACATGCTCTATTTGAGT
CCTGTCAATGGAACAGTTCTCTTTGACCAGCCTTCTACTAGTTCTGAGCCACTCAACAAA
CCTTTGACAGAGCTATCAACAGAGGCAGGTCCTTCCACAGTGATTCCCTCAAATGCTGTC
AGTAAGGGACCAATAGAACATGAGGTAGATTTACAACTGTACCGTCTCTCGGGCAGCATT
CACCGACAGAGAGATGAAAAATTATGTCGTCACAATTCCAAAGGATGTTGTGTGCACTGT
TCGGCACTGGAGCCCTGGGATGAGGGCTATCTTAAAGAACACAACATCAAACATATGTCA
TTCCACGCCTACCTTCGCAAGATGACATCAGGGAAGTTCATTACACTGGATGAACTGTCA
TGTAAAATAAAGCCAGGCTGCAAGGAACACCCTCCCTGGCCCCGCGGCATCTGCTCGTCG
TGTCAGCCGGGCGCTGTGACGCTCACGAGGCAGCCCTACCGCCATGTGGACAACGTGCTA
CTGGAGCACGCCGCGCCCGTTGAGCGCTTCCTTTCCTACTGGCGCGCCACGGGTCACCAG
CGCGTGGGCTTCCTGTACGGCCGCTACGAGCTCCACCCCGACGTGCCGCTGGGTATTCGC
GCCCGCGTGGCCGCCGTTTACGAGCCGCCTCAGGAGTGCAGCCGGGACGCCGTCCGCCTG
GCGTCGGACGACCACGCCGCGCTCCTCGACCGCCTCGCCGCCCGTCTCGGCCTCGAGCGT
GTCGGCTGGATCTTCACCGACCTGCTACCGTTGGATCTAGTCAGCGGCACGGTGCAGTGT
CTGAGGGGTGTGGACACGCACTTCCTCTCCGCTCAGGAATGTATCACGGCAGGACATTTC
CAGAACGAGCATCCGAACGCGTGTAGGCACGCGTCCTCCGGCTACTTTGGCTCTAAATTC
GTGACGGTGTGCGTGACAGGCGACGCCGACAACCACATCCACTTGGAGGGCTATCAGGTG
TCGGGTCAGTGCGCGGCGCTGGTGAGGGACGGCATCCTACTGCCCACCAGGGACGCTCCC
GAACTCGGATACATTCGGGATTGCTCGCCCGAACAGTACGTGCCTGACGTTTACTATAAG
GAAAAGGATGCGTACGGCAACGAAGTAGGCGTGTCGGCGAAGAGGCTACCGGTGGCTTAT
TTGCTGGTGGACGTGCCGGTGGGCGTGGCGCCCGCAGCAGGCGAGCCCACCTTCGACCCC
CGGGCGTCGTTTCCTCCCGCGCACCGGCCCCTGCAGCAGCACGTGCAGTCCCTGAGCGGC
CTCCACGCGCACGTGGAGCGCGCCGAGTCGTTCCTGGCAGCGGCCTCCGACTTGCACGTG
CTGCTGTTCCTGGCTACCAACGACGCCGCGCCGCTGAGCCTGGAGCAGCTGGCGCCGCTG
CTGGACGCCGTCCGCCGCCGCGACGCGTCCGCGGCCGAGGCGTGGCGCGCGTCGCCCGCG
GCCGCCGCGCTGCTGGCCCCCCGTCTCTTTCTGTGTCAGGTGACTCGTGTCAGTACAGCT
CTTTCTCTCGTGTTTCAGGAACGCCATGTAACGAGCCCGCCGTCGGCCGCCGGTCCTTCC
TCGCCGACGGAATATAGAAATTACTAG
Protein sequence:
MSGTKKMTLRVQSSEGTARVEMLDTEVTSRLYERVHDTLNLNSFGFALHKDRARKQEISS
SKSRQLREYGLQHGDMLYLSPVNGTVLFDQPSTSSEPLNKPLTELSTEAGPSTVIPSNAV
SKGPIEHEVDLQLYRLSGSIHRQRDEKLCRHNSKGCCVHCSALEPWDEGYLKEHNIKHMS
FHAYLRKMTSGKFITLDELSCKIKPGCKEHPPWPRGICSSCQPGAVTLTRQPYRHVDNVL
LEHAAPVERFLSYWRATGHQRVGFLYGRYELHPDVPLGIRARVAAVYEPPQECSRDAVRL
ASDDHAALLDRLAARLGLERVGWIFTDLLPLDLVSGTVQCLRGVDTHFLSAQECITAGHF
QNEHPNACRHASSGYFGSKFVTVCVTGDADNHIHLEGYQVSGQCAALVRDGILLPTRDAP
ELGYIRDCSPEQYVPDVYYKEKDAYGNEVGVSAKRLPVAYLLVDVPVGVAPAAGEPTFDP
RASFPPAHRPLQQHVQSLSGLHAHVERAESFLAAASDLHVLLFLATNDAAPLSLEQLAPL
LDAVRRRDASAAEAWRASPAAAALLAPRLFLCQVTRVSTALSLVFQERHVTSPPSAAGPS
SPTEYRNY