New model in OGS2.0 | DPOGS208079  |
---|---|
Genomic Position | scaffold191:+ 74490-79586 |
See gene structure | |
CDS Length | 2229 |
Paired RNAseq reads   | 1149 |
Single RNAseq reads   | 2688 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA007789 (0.0) |
Best Drosophila hit   | (6-4)-photolyase, isoform B (4e-131) |
Best Human hit | cryptochrome-1 (0.0) |
Best NR hit (blastp)   | cryptochrome 2 [Danaus plexippus] (0.0) |
Best NR hit (blastx)   | cryptochrome 2 [Danaus plexippus] (0.0) |
GeneOntology terms    | GO:0050896 response to stimulus GO:0009881 photoreceptor activity GO:0005737 cytoplasm GO:0003913 DNA photolyase activity GO:0006281 DNA repair GO:0018298 protein-chromophore linkage GO:0005634 nucleus GO:0000166 nucleotide binding GO:0045449 regulation of transcription GO:0048511 rhythmic process |
InterPro families    | IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal IPR006050 DNA photolyase, N-terminal IPR014729 Rossmann-like alpha/beta/alpha sandwich fold |
Orthology group | MCL10635 |
Nucleotide sequence:
ATGTCGGTTGCCGAGACGCTGCCGCTTCGAGCGCGCTCGCCCACCGCACAGAAGAGCTCG
CAACCTGCCGGTGTTCCTAAGGAGAAGCACACCGTCCACTGGTTCAGGAAGGGTCTCAGA
TTACATGATAACCCGGCCCTGAGAGAGGGGCTCGTTGATGCGACAACTTTCAGATGCGTC
TTCATTATAGACCCATGGTTCGCCAGCTCGTCTAACGTCGGCATTAATAAATGGAGATTT
CTATTACAATGTCTTGAGGACCTAGACAAAAACTTGAGGAAATTAAATTCCCGTTTATTC
GTGGTGAGAGGTCAGCCGGCAGACGCTCTGCCGAAGTTGTTTCGTGAGTGGGGAACCACT
GCGCTGACCTTCGAAGAAGACCCTGAGCCCTACGGCCGGGTCCGGGACCATAATATTATG
ACCAAATGCCGCGAAGTCGGTATTCAAGTAACTTCAAGAGTATCACACACCTTGTACAAA
TTAGATGATATAATTGAGAAGAATGGTGGTAAGGCGCCGCTGACCTATCATCAGTTCCAA
GCGCTGATAGCGAGCATGCCCCCGCCTCCGTCCGCCGAACCCACCATCAGTTTGGAGACA
CTCAACCGCGCCGTTACACCTATCTCGGATAATCACGACGAACGATTTGGAGTGCCGACA
CTCGAAGAACTTGGCTTCGATACGGAAGGTCTTAAACCTCCAATATGGATCGGCGGAGAA
AACGAAGCTCTGTTGAGACTAGAACGACATTTGGAGAGAAAGGCTTGGGTCGCTTCGTTC
GGAAGACCGAAGATGACGCCAGAATCACTCTTGTCGAGTCAAACGGGCTTGTCACCTTAT
CTCAGATTTGGTTGTCTATCGACGAGACTTTTTTACTATCAATTGAGCGAGCTCTATAAA
AGGATAAAACAGGAACGCCCGCCGCTGTCACTCCACGGTCAGATACTTTGGAGGGAATTT
TTCTATTGCGCTGCAACCAGAAATCCAAATTTCGACAGAATGGAGGGTAATCCGATATGT
GTCCAAATACCGTGGGAAAAAAATCAGGAGGCTCTCAAGAAATGGGCTAACGGTCAGACT
GGGTTCCCGTGGATAGACGCTATAATGATCCAACTTCGCAATGACGGTTGGATCCATCAC
CTGGCGAGGCACGCGGTCGCCTGTTTCCTCACGAGGGGGGACCTCTGGATCTCGTGGGAA
GAAGGCATGAAGGTGTTCGACGAGCTGCTGCTGGACGCCGACTGGTCTGTGAACGCTGGC
ATGTGGATGTGGCTCTCATGCTCGTCTTTCTTCCAGCAGTTCTTCCATTGCTACTGTCCA
GTGCGGTTCGGACGAAAAACTGACCCTAACGGAGATTTTATTAGGAAGTACATCCCAGTC
CTTAAAAACATGCCCACGCGATACATTCACGAGCCATGGGTATGTCCGGAGGAGATTCAA
AAATCTATTCGCTGCATAATAGGAAAGGATTACCCAATGCCTATTGTTGACCACACTAAG
GCATCGGAGATTAACCTTGAGCGCATCAAGCAGGTGTACGCACAACTAGCGAAGTTTAAA
CCTCAAGGTGCACTAATTCCGCAAATGTTGCAAAGACCAAATGTGTTGCAGTCATCGCCC
AGCCCAACGTCTATAATTGCAAATATAAATCAGTCTAACTACCTGTGTAGTCAGAGTAGT
GATGTGCCCACGCCGACTAATCAAACGACGAATCAATTCAAAGAAGATGCTGTATTCCTT
AAGCCCACAGTGAATAACATAAAATCAAATGTGGATAAACAGCAACAGTTCAAGCAAGTT
GTTATTGTGCAGGAGGATAAACATTCAGAAAATCAGCGACATTCGGTTGGTAACAAGTAC
ATTGTAAATGAAATAAACAAAAATATTAATGATATACCGGTCAAACAAAACAATTATGAC
TTCAAAGCTCTGACATTAAATTTGAATAAATTTTCAAATGAGCCCTTAACATTTTTGAAT
CAGACGCCAAATAAAAATGAAAGTTTTGGGCAGGATGTTAATAATGTGATAGATGTGTAT
AGTACCAGCAAACCAAAGTTTTACTTCACCGACAATGGAGTTATAACTCACAATGAAAAT
GCACAAACTTTTAAAAGGGATAGTTATTCAGATAATTATAATAAAGAGAGTACCGGGTCT
AACAGAGTTGGCGAGGTACACAGTAATAACCCACAAACAGATAAGATCTCATCGGAAAAG
AAAAATTAA
Protein sequence:
MSVAETLPLRARSPTAQKSSQPAGVPKEKHTVHWFRKGLRLHDNPALREGLVDATTFRCV
FIIDPWFASSSNVGINKWRFLLQCLEDLDKNLRKLNSRLFVVRGQPADALPKLFREWGTT
ALTFEEDPEPYGRVRDHNIMTKCREVGIQVTSRVSHTLYKLDDIIEKNGGKAPLTYHQFQ
ALIASMPPPPSAEPTISLETLNRAVTPISDNHDERFGVPTLEELGFDTEGLKPPIWIGGE
NEALLRLERHLERKAWVASFGRPKMTPESLLSSQTGLSPYLRFGCLSTRLFYYQLSELYK
RIKQERPPLSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPWEKNQEALKKWANGQT
GFPWIDAIMIQLRNDGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAG
MWMWLSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPVLKNMPTRYIHEPWVCPEEIQ
KSIRCIIGKDYPMPIVDHTKASEINLERIKQVYAQLAKFKPQGALIPQMLQRPNVLQSSP
SPTSIIANINQSNYLCSQSSDVPTPTNQTTNQFKEDAVFLKPTVNNIKSNVDKQQQFKQV
VIVQEDKHSENQRHSVGNKYIVNEINKNINDIPVKQNNYDFKALTLNLNKFSNEPLTFLN
QTPNKNESFGQDVNNVIDVYSTSKPKFYFTDNGVITHNENAQTFKRDSYSDNYNKESTGS
NRVGEVHSNNPQTDKISSEKKN