| New model in OGS2.0 | DPOGS200703 |
|---|---|
| Genomic Position | scaffold1163:+ 212-4415 |
| See gene structure | |
| CDS Length | 1050 |
| Paired RNAseq reads | 420 |
| Single RNAseq reads | 1359 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005238 (8e-132) |
| Best Drosophila hit | F box and leucine-rich-repeat gene 4 (3e-53) |
| Best Human hit | F-box/LRR-repeat protein 4 (8e-48) |
| Best NR hit (blastp) | PREDICTED: similar to GA14916-PA [Nasonia vitripennis] (9e-81) |
| Best NR hit (blastx) | PREDICTED: similar to GA14916-PA [Nasonia vitripennis] (6e-81) |
| GeneOntology terms | GO:0016059 deactivation of rhodopsin mediated signaling |
| InterPro families | IPR022364 F-box domain, Skp2-like IPR006553 Leucine-rich repeat, cysteine-containing subtype IPR001810 F-box domain, cyclin-like |
| Orthology group | MCL11412 |
Nucleotide sequence:
GACGAGACTATATTATCGGTGATGAAATATTTAGATATGCAGTCTTTATGTAGATGTGCT
CAGGTCAATACACATTTCAAAAGGCTGGCATCTGATGCCATATTGTATAGAAGTATTGAT
CTCCGACCATACTGGCATTGTGTGAGATCTCAGGTGCTTGTCAATCTATCAATGAAATGC
AAATTCCTACAGAAACTTGATCTGTCATGGTGCGGCAGTCATTGCATGATACAGTCCTAT
TATGTTGTTAACTTCTTAAAATACAGCGGCTCTGAATTAACACATCTAAGGATGAATTGC
TGTAAATTTGTTGACAACACCGTACTAAGAGCTATTGTTGACACTTCATTTAATTTACAA
GAGCTATGTCTGCGGTCGGTGGTCACGTGTTCTGAATGGTCGTGTTTATCTTCACTCACC
AAGTTAAGGCGACTTGATCTATACAGAACTCACATAACTACATCGGCTGCTGTCTCCATT
GTTTGGTCAAATCCATCGCTAGAGCACCTCAATGTTGGTTCCTGTAAAATGATATCAGCC
ATGGATGAGGTGGCGCTAGCTCTGGGTGCGAACTGTCCTGATCTGATGTCCGTGGATTTT
TGGAAGTCCTATTCATTAACGGCTATTGGTATACGAGCTTTGGGTAACTGCAAGAAGTTA
CAGGAGTTGGATGTAGGATGGTGCCTACAAGCTGGTAGTTCTGGCGAGTGGTTGTCATCT
TTGACCGGTGGTGATCTGAGGAAGTTGTTCCTTGGTGCTCTCCGCGGTATCTGTGATAGA
GATCTCAGAGTATTACTGCCAAAAGCTACTAAACTCGCCCAGTTAGACCTGCTCGGAGTC
AGGGCTGTCAGTCCGGATATATGCTCAGACATTTTAGCGGAATGTCGCGAACTTCGCCTA
CTAGATGTTAGCTTCTGTGATCAAATACAAGAATCTCAGGTGTTGGAGTGGCGCAAACAG
TATCCACACGTCAGTATAAAGAGGTCATTTCAATCAGCAAACATGACAACGGCTCCGAAC
GCATTATTCCTAGCACCCAGCTTGGAATAA
Protein sequence:
DETILSVMKYLDMQSLCRCAQVNTHFKRLASDAILYRSIDLRPYWHCVRSQVLVNLSMKC
KFLQKLDLSWCGSHCMIQSYYVVNFLKYSGSELTHLRMNCCKFVDNTVLRAIVDTSFNLQ
ELCLRSVVTCSEWSCLSSLTKLRRLDLYRTHITTSAAVSIVWSNPSLEHLNVGSCKMISA
MDEVALALGANCPDLMSVDFWKSYSLTAIGIRALGNCKKLQELDVGWCLQAGSSGEWLSS
LTGGDLRKLFLGALRGICDRDLRVLLPKATKLAQLDLLGVRAVSPDICSDILAECRELRL
LDVSFCDQIQESQVLEWRKQYPHVSIKRSFQSANMTTAPNALFLAPSLE