| New model in OGS2.0 | DPOGS200704 |
|---|---|
| Genomic Position | scaffold1163:+ 6672-16524 |
| See gene structure | |
| CDS Length | 1443 |
| Paired RNAseq reads | 690 |
| Single RNAseq reads | 1623 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001876 (4e-153) |
| Best Drosophila hit | amylase distal (7e-141) |
| Best Human hit | alpha-amylase 2B precursor (1e-131) |
| Best NR hit (blastp) | alpha-amylase 3 [Diatraea saccharalis] (4e-166) |
| Best NR hit (blastx) | alpha-amylase 3 [Diatraea saccharalis] (4e-165) |
| GeneOntology terms | GO:0004556 alpha-amylase activity GO:0005509 calcium ion binding GO:0005975 carbohydrate metabolic process GO:0003824 catalytic activity GO:0043169 cation binding |
| InterPro families | IPR015902 Alpha amylase IPR006046 Glycoside hydrolase, family 13 IPR017853 Glycoside hydrolase, superfamily IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic domain IPR006048 Alpha-amylase, C-terminal all beta IPR013781 Glycoside hydrolase, subgroup, catalytic core IPR013780 Glycosyl hydrolase, family 13, all-beta IPR006047 Glycosyl hydrolase, family 13, catalytic domain |
| Orthology group | ND |
Nucleotide sequence:
ATGTGTATTAAGACAAATCGTCTATTAAATAGAACAACAATAGTGCATCTATTTGAATGG
AAGTGGCTCGACGTTGCCGAGGAGTGTGAAAGGTTTCTGGCCCCCAAGGGTTTTGGTGCT
GTGCAGATTTCGCCGCCGTCAGAGAATTTGATCATAAAAACACAAAATGGTCTAAGACCC
TGGTACGAAAGGTATCAAGTGATGTCATATAATTTAGAAACACGCTCCGGCAACCAAGAT
GACTTCTTGGACATGACAAAGAGGTGTAATAAAGTTGGTGTTAGGATATACGCAGACGTT
GTTATAAACCATATGACTGGTTCACATAAGAGCAATAAAGGAACTGGTGGAAGCACTGCA
GACTTTGACAAGTACAGTTACCCATCCGTCCCATACACTGCTGAGAATTTTCATTCATCC
TGCATAATCAATAACTATTACAATGCTACTGAGGTTCGTAACTGTCAATTATTAGGACTG
AAAGATCTCAATCAGACCGAAGAATATGTAAGACAAAATATTGCAAATTACATAAATAAT
CTCATAAAACTCGGCGTGGCTGGCTTAAGAATAGATGCCGCCAAACACATGTGGCCAAGT
GATCTCAGAGAAATTTATACAAGGTTAGACGATTTGAACCCTGAATTCGGTTTTCCACCA
AACACAAGACCGTATATCTATCAAGAGGTAATTTATTATGGAAGCGAGCCGATACGACCT
GAAGAGTACACTCCTCTTGGAGACGTCACTGAATTTAGGGTTGGCAATGAACTGAAGAAC
GTCTTTCGTGGAATTAACTCTATGAAGTGGTTAGTGAATTGGGGTGAGAAATGGGGACTG
TCACCTGCTAAAACTGCCTTAGTTTTCATTGACAACCACGACACACAACGTAGCAGCAAC
ATGTTGACATACAAAGAGGCGAGAGCTTATAAGGCCGCCATAGCATTCATGCTAGCACAT
CCTTATGGCCGACCTCGGATTATGAGCAGTTACTTCTTCACAAATAATGAAATGGGACCT
CCTAGTGATGATAGTGAGAATATACTGTCACCGATAATACACGAAGATGACACATGTGGC
AATGGCTGGGTGTGTGAACATCGCTGGCGTCAGATATACCAAATGATCGGATTCAGGAAT
GCTGTCCTTAATACAAGCATCAAAAACTGGTGGAATAATGACAACAAACAAATTGCTTTT
GGGAGAGATGGAAAGGGATTTATAGTATTTAATGGAGACGAAGTTGAACTTAACGTTACT
CTGCAGACTGGACTTCCCCCCGGGGAGTATTGCGATGTAATATCGGGTTCGAGAGTTGAA
TCTCATTGCACAGGGAATAAAATATACGTAAATAATGATGGTAGAGCGCATTTTTATAAG
TCACAATATGCTGAAGATATGCATATAGCGATCCATGTTGGCAAAGAGGTGAGGGTTAAT
TAA
Protein sequence:
MCIKTNRLLNRTTIVHLFEWKWLDVAEECERFLAPKGFGAVQISPPSENLIIKTQNGLRP
WYERYQVMSYNLETRSGNQDDFLDMTKRCNKVGVRIYADVVINHMTGSHKSNKGTGGSTA
DFDKYSYPSVPYTAENFHSSCIINNYYNATEVRNCQLLGLKDLNQTEEYVRQNIANYINN
LIKLGVAGLRIDAAKHMWPSDLREIYTRLDDLNPEFGFPPNTRPYIYQEVIYYGSEPIRP
EEYTPLGDVTEFRVGNELKNVFRGINSMKWLVNWGEKWGLSPAKTALVFIDNHDTQRSSN
MLTYKEARAYKAAIAFMLAHPYGRPRIMSSYFFTNNEMGPPSDDSENILSPIIHEDDTCG
NGWVCEHRWRQIYQMIGFRNAVLNTSIKNWWNNDNKQIAFGRDGKGFIVFNGDEVELNVT
LQTGLPPGEYCDVISGSRVESHCTGNKIYVNNDGRAHFYKSQYAEDMHIAIHVGKEVRVN