| New model in OGS2.0 | DPOGS201662 |
|---|---|
| Genomic Position | scaffold1555:+ 9414-10970 |
| See gene structure | |
| CDS Length | 1557 |
| Paired RNAseq reads | 647 |
| Single RNAseq reads | 2025 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005416 (4e-178) |
| Best Drosophila hit | germ cell-expressed bHLH-PAS (1e-78) |
| Best Human hit | neuronal PAS domain-containing protein 2 (3e-16) |
| Best NR hit (blastp) | methoprene-tolerant protein 1 [Bombyx mori] (0.0) |
| Best NR hit (blastx) | methoprene-tolerant protein 1 [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0003700 sequence-specific DNA binding transcription factor activity GO:0045449 regulation of transcription GO:0005634 nucleus GO:0006355 regulation of transcription, DNA-dependent GO:0004871 signal transducer activity GO:0007165 signal transduction |
| InterPro families | IPR011598 Helix-loop-helix DNA-binding IPR000014 PAS IPR001092 Helix-loop-helix DNA-binding domain IPR013655 PAS fold-3 |
| Orthology group | MCL16514 |
Nucleotide sequence:
ATGGCATCTTCTGGAGCAGCTAGTACTCGTCTCGGAGTGCATTCCGGGATGACAAACCAG
GTTGGTCTTTCTAATCCAGATTTTGGAATGGCCGTAGCCGTACCACAAACATTTCAATTA
CAAACTGTAAGTTGCGGCGACTCTTCGTCGGATGCTAATTCGCCTGACATACCAATAGTC
AAAGCAAGTGATAGACAGTCTCGTATAATAGCTGAGAAACACCGCAGGAGTCAGTTTAAC
TCTCAGATAGCTCAAATGATGTCTCTGTTGTCTGACATTGTTCATTCCCAACGAAAAGTT
GATAAGACCAGTGTTTTGCGTCTTGCAGCGACGAAACTGAGGAATGAACATGTTTTCGGT
GATTCGATCAAATGCTGTCACCTCGAGACATGGTCCTCTGCCATATTAAAATTTTTTGAT
CTCATTGGGGGCTTCATGATTGCTATAACTTGCAAAGGTCGTATTTGCAATGTTTCACCA
AATGTCCAAGATAAGTTAGGATATTGTCACATAGATCTCCTTAGTCAAGATATTTATAAC
TATGTTCACAATGATGACAAAGAAATTTTAAAATTACATATATTTCCTCCTGAGTTACAC
ACAGGCTGTGATCCAAAACTTTTAGAACAACATCATACCTTTCACATTCGCATCATGAGA
GCAGGGGCCCGGTCAGATCCTCCGAGATATGAGCGTTGTAGAATTGATGGAGTGTTACGT
CGATCTGATCATGCTACATCTGAATGTGTTCAAGATGAACAAACTATAAGAAGACAAAGA
GTAAGAAATCATCGTACATTTTCATCAAGCGGGAATGATTATGTTTTCATTGCTATGGTT
CATGTTTTATCAAACAACTTACCAGCAAGGATGCTGCCTCCCACGGCATATTCTGAGTAT
TGGACGAGGCATTTGATAGATGGAAGAATTGTGCAATGTGACCAGGGTATCTCACTGGCT
GCAGGTTACATGACTGAAGAGGTAACTGGAGCATCTGCATTTGTTTTCATGCACAAAGAG
GATGTCCGTTGGGTTGTCTGTATATTACGCCAAATGTATGACCAAAGTAGGGAGTTTGGA
GAGTCTTATTACAGACTTATGTCCAGATCGGGGCATTTTTTATATATGAGATCAAGAGGT
TACCTTGAAATAGATAAAAAAACAAAAAAAGTACAAAGTTTTGTATGTGTTAATAGTGTT
ATAGGGGAAGATTATGGTAGAAAGATGATGGAAGAAATGAAGAGGAAATTCTCTGTCATG
GTGAACACTGAGAGAACAGAAAATGAAGTAGTGGCAGCTATAGATGAAGCTCCTGTTGAA
CATCCTAAGCGTTTGGAGAGAATTGTAATGCATTTAGTTGAACCACCAACAAGCGAAAGT
GTAGAGGAATTCAAATTAGTACCACCATCGAGAGAAAACATAATCTCGGCGATTAAAAAT
AGTGAGAAAGTTGTACAAGAAACCGGTGTAAGGTTTGACAATCGCAAAAGGAAAAACTCA
GACAGTGATGACAACAGTGAACAATTGAAACGACACAGTGGAATATCAGAATGTTAG
Protein sequence:
MASSGAASTRLGVHSGMTNQVGLSNPDFGMAVAVPQTFQLQTVSCGDSSSDANSPDIPIV
KASDRQSRIIAEKHRRSQFNSQIAQMMSLLSDIVHSQRKVDKTSVLRLAATKLRNEHVFG
DSIKCCHLETWSSAILKFFDLIGGFMIAITCKGRICNVSPNVQDKLGYCHIDLLSQDIYN
YVHNDDKEILKLHIFPPELHTGCDPKLLEQHHTFHIRIMRAGARSDPPRYERCRIDGVLR
RSDHATSECVQDEQTIRRQRVRNHRTFSSSGNDYVFIAMVHVLSNNLPARMLPPTAYSEY
WTRHLIDGRIVQCDQGISLAAGYMTEEVTGASAFVFMHKEDVRWVVCILRQMYDQSREFG
ESYYRLMSRSGHFLYMRSRGYLEIDKKTKKVQSFVCVNSVIGEDYGRKMMEEMKRKFSVM
VNTERTENEVVAAIDEAPVEHPKRLERIVMHLVEPPTSESVEEFKLVPPSRENIISAIKN
SEKVVQETGVRFDNRKRKNSDSDDNSEQLKRHSGISEC