New model in OGS2.0 | DPOGS203361  |
---|---|
Genomic Position | scaffold5498:- 1163-5102 |
See gene structure | |
CDS Length | 1128 |
Paired RNAseq reads   | 604 |
Single RNAseq reads   | 2182 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011890 (1e-105) |
Best Drosophila hit   | alpha catenin (3e-115) |
Best Human hit | catenin alpha-2 isoform 1 (7e-74) |
Best NR hit (blastp)   | GK11940 [Drosophila willistoni] (2e-132) |
Best NR hit (blastx)   | GI23967 [Drosophila mojavensis] (2e-113) |
GeneOntology terms    | GO:0005915 zonula adherens GO:0016342 catenin complex GO:0007016 cytoskeletal anchoring at plasma membrane GO:0008092 cytoskeletal protein binding GO:0003779 actin binding GO:0030720 oocyte localization involved in germarium-derived egg chamber formation GO:0005912 adherens junction GO:0005914 spot adherens junction GO:0030055 cell-substrate junction GO:0007155 cell adhesion GO:0045296 cadherin binding GO:0007163 establishment or maintenance of cell polarity GO:0005198 structural molecule activity GO:0015629 actin cytoskeleton GO:0005913 cell-cell adherens junction GO:0005886 plasma membrane |
InterPro families    | IPR017997 Vinculin IPR006077 Vinculin/alpha-catenin |
Orthology group | MCL10484 |
Nucleotide sequence:
ATGTCCAAGTTCGCGGTCCGTGTGGACGCGGCCGTATCAGCCCTCGGTGGAGGGGCGGGT
TCTGGTTTGGACGAGAACGACTTCATAGACGCGTCCCGTCTCGTTTATGATGCTGTTAGG
GAGATACGGCGAGCTGTCCTCATGAACAGGGTGAGTGATAGAGTAGAGATAGGCCAAGGA
GATAGGACGAACAGGGTGAATGATAGAGTAGAGATAGGCCAAGGGGATAGGACGAACAGG
GACGAAGAGGATCTGGACCCCGAGGACGTGGAGCTCGACGAGCATTACACCCTGGAAACG
AGAAGCAAATGTGAGATCACAGCTCGTGACGAGCATACAAGCGACGATCTGGACACCGAC
ACGGAGTTTGAACCTGTCGAAGATATGACCATGGAGACGAGGAGCAGATCGAGCGCCCAC
ACCGGAGAGCACGGGGTCGACGAATATCCGGACATCAGTGGAATAACGAACGCAAGAGAA
GCCATGCGGAAAATGACGGAAGAAGATAAGAGGAAGATACTCCAGCAAGTGGAGTTGTTC
AGGCGGGAGAAGATGACCTTCGACAACGAGGTCGCTAAGTGGGACGATGCCGGAAACGAC
ATCATAATGTTGGCCAAACACATGTGTATGATCATGCTCGAAATGACAGACTTCACCAGA
GGCCGCGGTCCCTTGAAGACGACCATGGACGTCATTAACGCGGCCAAGAAGATATCGGAG
GCTGGAACTAAACTGGACAAACTCACGAGAGAAATAGCCGAACAGTGCCCGGAGTCGTCG
ACCAAACAGGATTTGCTGGCCTACCTTCAGCGTATAGCGCTCTACTGTCACCAGATACAG
ATCACCAGCAAGGTGAAGGCGGACGTTCAGAACATATCCGGCGAGCTGATCGTTAGCGGG
TTGGACAGCGCCACGTCTCTCATACAAGCTGCCAAAAACCTGATGAATGCTGTGGTGCTG
ACGGTCAAGGCCTCGTACGTCGCCTCTACAAAATACACCCGACAGGGCACTATCGCCGTA
AGTATTGAAAAAACAACACATTGCATAGAATTTACATCGAAATCCCGTGTATTATATAAT
AATAGATACGTAAAAAAACATCATCAAAATCGGTCCAGCTATTTATAG
Protein sequence:
MSKFAVRVDAAVSALGGGAGSGLDENDFIDASRLVYDAVREIRRAVLMNRVSDRVEIGQG
DRTNRVNDRVEIGQGDRTNRDEEDLDPEDVELDEHYTLETRSKCEITARDEHTSDDLDTD
TEFEPVEDMTMETRSRSSAHTGEHGVDEYPDISGITNAREAMRKMTEEDKRKILQQVELF
RREKMTFDNEVAKWDDAGNDIIMLAKHMCMIMLEMTDFTRGRGPLKTTMDVINAAKKISE
AGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQIQITSKVKADVQNISGELIVSG
LDSATSLIQAAKNLMNAVVLTVKASYVASTKYTRQGTIAVSIEKTTHCIEFTSKSRVLYN
NRYVKKHHQNRSSYL