| New model in OGS2.0 | DPOGS207474 |
|---|---|
| Genomic Position | scaffold264:+ 1443-5897 |
| See gene structure | |
| CDS Length | 2370 |
| Paired RNAseq reads | 1008 |
| Single RNAseq reads | 2490 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000946 (4e-176) |
| Best Drosophila hit | mutagen-sensitive 210, isoform C (9e-124) |
| Best Human hit | xeroderma pigmentosum, complementation group C isoform 2 (9e-92) |
| Best NR hit (blastp) | nucleotide excision repair protein [Bombyx mori] (0.0) |
| Best NR hit (blastx) | nucleotide excision repair protein [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0006289 nucleotide-excision repair GO:0003684 damaged DNA binding GO:0005634 nucleus |
| InterPro families | IPR018328 DNA repair protein Rad4, DNA-binding domain 3 IPR018325 DNA repair protein Rad4, transglutaminase-like domain IPR018326 DNA repair protein Rad4, DNA-binding domain 1 IPR018327 DNA repair protein Rad4, DNA-binding domain 2 IPR004583 DNA repair protein Rad4 |
| Orthology group | MCL14141 |
Nucleotide sequence:
ATGTTTAATTTCGTTACATTGCCTATAAGGCCACCCGTTTCGGAATTGTGTTCACTCTCA
ACCAAAGTGAAGGGCACAGAAGATGCAAAGAAAAACGACCAGAAAACAAAATCACCAAGA
AAATCAACTAAGAGTAAAAGCAAGAGAGATGTTATTCCACAGTTGGATGGAAATTATGAC
GTAATTGAAAGTGATGATGGAAATATTATGCAAGTTGATGGTGGTGATGATACAACCACA
GCTAGAACGAGAAGACAACGGCTTTCATTAAGAAAAGTGAAACAAGCAAATGATGTTAAG
AAACCAGAGGAGGTTATCAGCCCAACTAAAATAACAAAAAAGAATCTCAGTTTGAAAATA
GAAAATAAGACTGTGGGTGAAACAAAGCGAAAACCAACGACAAGGACCAAAAGAAACTTG
AGATTGCAATCAAAAAATACAAAAACAACAATACATGAAACTAAACAGTCAGAAAGTCTT
TCTAATAAAAAAGATGATATAAAAGCCACTAAAAGTAAACGAAAAATATTAAGTTTAAAT
CTATCAGTTACCAAAAACGACCAAGATAACAAAACCAAAAGTACATCAAAAACGATAGTT
AATAAATGCTCTGCAAACAGAATTACTAGAGCAAACATTACTTCACTCAACGAATCAAAC
GCAATACTTACTAAGACTTTATCAAAACAATCGTCCTTAGATAAAGTTCCTAAGATCATC
CTTACAGACATAAACGATCAAACTGTATCGAGTAAATTCTTTGAGAAGTCGCCCACCAAA
AGAACGTCAAGAAAACGATCACAAACAACGGAACCAAAGAAATCGCCGAATGAAATGTCA
AATGCACGAACGAGAAGTGCACACGCAACAGAAAGCAAGTATTTTGCTCCTGAAACCGAT
AAAAGTCCCGCCAAAAGATGTAGAACAACTAGAAAAATTGATTCTGATGATTCAAAAAGA
GTAAGTCATAGAGATCTCGCGAAAAAGAATGTCCAAGATCTCCAATCTCCAAAGATCTCC
AAACCCAAAAATGATGTCACGAAAGATCTCGTTCACATTATCAAGGGAAGGGTAAAGGAG
GCCAAAACGGATGCAAAAAAACGTATTGTAAAAGGAAAAGAAAAACATGAATCTGATTCT
GATAGCGATCATCTGGCCGTTGAATCTCCAGCTCCCCGTAAATCTGAGAGCGACGAAGAC
TTTAAAGTGGAAAAAGTTACACCTAAACAAAAGAAGCCAGTTAAGAAAATAGACCGATGT
GTTATATCAGCAGATGATGAGATGCCTTTGAATAAAATTAATGTGTGGTGCGAGATATAT
GTTGAAGAATTAGAAGAGTGGGTTCCCGTTGACGTTGTTAGAGGCATAGTTCATTCTGCC
AATGAATTATATAGTCGTTCGACACACCCTGTATCATACATTGTTGGTTGGGACAACAAT
AATTACTTAAAAGATCTGACAAGACGCTACGTGCCATATTGGAACACAGTTACACGTAAA
CTGAGAGTTGATCCTGGATGGTGGGAAGAAGCGATAAAGCCGTGGTTGGGACCAAAAACC
GCCAGGGACAGGGAAGAGGATGAAAGATTGCACAGAATGCAACTAGAAGCGCCATTGCCC
AAAGTTATATCCGAATACAAAAACCACCCTCTATATGTGTTGAAACGTCATCTCCTCAAG
TTCGAAGCCATATATCCGCCTGATGCTGAAACCCTTGGCTTCGTTCGCGGGGAGCCCGTT
TATCCGAGGGATTGTGTTTACATTTGCAAGTCGAGGGATGTTTGGATCAAGGATGCCAAA
GTAGTTAAACTCGGAGAACAGCCATACAAGATAGTTAGAGCTCGTCCCAAATATATAAGA
GCCACAAACACCTTTATAACTGATCGACCTCTGGAAATCTTTGGGCCATGGCAGACACAG
GATTATGAACCTCCGACTGCAGAAAATGGAATTGTTCCACGGAATCCTTATGGAAATGTT
GAATTGTTCAAAAAATGCATGCTACCGAAAGGCACTGTCCATATCAATTTACCAGGTTTA
CAACGAGTTGCTAAGAAATTGAATATTGATTGTGCTCCAGCGTTAACAGGATTTGACTGC
AATGGTGGCTATGTCCACCCTGTATATGAAGGCTTTGTAGTCTGTGAAGAGTTTGAAAAG
GTTCTCACGGAAGCTTGGCTTCAGGATCAAGAAGAGTTGGAACGTAAAGAACAGGAAAAA
GTAGAAACCCGAGTGTACGGAAACTGGAAGCGGCTTATAAGAGGACTTATCATAAAAGAA
CGACTAAAAGCCAAATATGGATTTGCAGAGCCCAGCACATCTCAGGATAAAAAGAAGAAA
GGCCCAAAACTTGTTGTGAAGAAAAAATAA
Protein sequence:
MFNFVTLPIRPPVSELCSLSTKVKGTEDAKKNDQKTKSPRKSTKSKSKRDVIPQLDGNYD
VIESDDGNIMQVDGGDDTTTARTRRQRLSLRKVKQANDVKKPEEVISPTKITKKNLSLKI
ENKTVGETKRKPTTRTKRNLRLQSKNTKTTIHETKQSESLSNKKDDIKATKSKRKILSLN
LSVTKNDQDNKTKSTSKTIVNKCSANRITRANITSLNESNAILTKTLSKQSSLDKVPKII
LTDINDQTVSSKFFEKSPTKRTSRKRSQTTEPKKSPNEMSNARTRSAHATESKYFAPETD
KSPAKRCRTTRKIDSDDSKRVSHRDLAKKNVQDLQSPKISKPKNDVTKDLVHIIKGRVKE
AKTDAKKRIVKGKEKHESDSDSDHLAVESPAPRKSESDEDFKVEKVTPKQKKPVKKIDRC
VISADDEMPLNKINVWCEIYVEELEEWVPVDVVRGIVHSANELYSRSTHPVSYIVGWDNN
NYLKDLTRRYVPYWNTVTRKLRVDPGWWEEAIKPWLGPKTARDREEDERLHRMQLEAPLP
KVISEYKNHPLYVLKRHLLKFEAIYPPDAETLGFVRGEPVYPRDCVYICKSRDVWIKDAK
VVKLGEQPYKIVRARPKYIRATNTFITDRPLEIFGPWQTQDYEPPTAENGIVPRNPYGNV
ELFKKCMLPKGTVHINLPGLQRVAKKLNIDCAPALTGFDCNGGYVHPVYEGFVVCEEFEK
VLTEAWLQDQEELERKEQEKVETRVYGNWKRLIRGLIIKERLKAKYGFAEPSTSQDKKKK
GPKLVVKKK