New model in OGS2.0 | DPOGS211962  |
---|---|
Genomic Position | scaffold71:- 267313-272259 |
See gene structure | |
CDS Length | 4947 |
Paired RNAseq reads   | 10218 |
Single RNAseq reads   | 22711 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA000910 (0.0) |
Best Drosophila hit   | laminin B1, isoform B (0.0) |
Best Human hit | laminin subunit beta-1 precursor (0.0) |
Best NR hit (blastp)   | PREDICTED: similar to Laminin B1 CG7123-PA, isoform A [Apis mellifera] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to Laminin B1 CG7123-PA, isoform A [Apis mellifera] (0.0) |
GeneOntology terms    | GO:0003674 molecular_function GO:0005578 proteinaceous extracellular matrix GO:0008150 biological_process GO:0005575 cellular_component |
InterPro families    | IPR013032 EGF-like region, conserved site IPR002049 EGF-like, laminin IPR013015 Laminin IV IPR008211 Laminin, N-terminal IPR006210 Epidermal growth factor-like |
Orthology group | MCL10767 |
Nucleotide sequence:
ATGGAAGCTGAATTTCATCTCACACATTTGATAATTCAATTTAAAACATTTAGACCCGCG
GCGATGTTAGTGGAGAGATCGTTCGACTTCGGTAACACATGGCGCGTCTATCGATACTTC
GCTCACAACTGTCACGAAGCTTTCCCTTCGATACCGAGACACAGTCAGCGCAGCTTGACG
GAGGTCGTCTGTGAATCTCGATATTCCGGCGTCGCTCCTTCCACCGAGGGTGAGGTAATA
TTCAGAGTTTTACCTCCGAATATCAATGTGACCAATCCATATTCAGAGGAAGTGCAGAAT
CTGCTCCGAATGACTAACTTGAGGATTAACTTTACGAAACTTCACACGCTGGGAGACGAT
TTACTCGATAACCGAGCGGAAATACAAGAAAAATATTATTACTCTATATATGAGATGACG
GTCCGTGGTTCATGCTCCTGTTACGGGCACGCTTCGCGGTGTCTGCCGATGCCTGGAGTC
GAGTCTAAAAACAATATGGTGCACGGACGATGCGAGTGTACACATAACACTCGCGGCTTG
AACTGCGAGTATTGTGAGGAATTCTACAACGACCTACCGTGGCAGCCGGCCGTGGGCAAA
ACATCCAACGCCTGTAAACGATGTACGTGTAACAACCACGCGACTACGTGCCACTTCGAC
GCCGCCGTTTACAATAAGACGGGGAAAATAAGCGGAGGTGTCTGCGATAACTGTCAGCAC
AACACCATGGGTGTCAATTGTGAACGGTGTATGCCGACTTATTACAAAGATCCCAGACTA
GACATACAGAGCCCAGATGTTTGCCAACCGTGTGACTGTGACCCAGAAGGTACGACCGAC
AAGGAAGTGCTATGTGATGATGAAACCGACGTAGCCAACAATAAAACAGCTGGTCGTTGT
CTATGTAAGGCCAACGTGGACGGCCTCAGGTGCGACCGATGTAAAGACGGGTATTGGAAT
TTCGACGCTCAGAACCCAGACGGGTGCGAGGCGTGTACCTGCGATAGCTTGGGCACTATC
AACGAGAGAGGATGCGATCCCGCAACAGGTGTCTGTTTCTGCAAACGACACGTTACAGGA
AGGAACTGTGATCAGTGTCTACCAGAATTTTATGGACTGTCTGACAGCGACGATGGCTGT
TCGCCGTGTGACTGTGATCTTGGTGGATCCATTGATAGGGACTGTGACGTAATAACCGGA
CAGTGTAAGTGTCGCCCTAACGTAACGGGACGTCGTTGTGACCAGCCTCTGCAGAACTAT
TTTGTCGGAGCCCTTGATTCTATTGTTTACGAAGCCGAGTCGAGTCAATGTAATTCACAA
ATCGACGACAACGCTATTCAAAGTCAACTGTGCCATGTGGTGATCAGAGAAAACTATCCA
GACGGCAGGAAAGAAACTTGGACAGGCCCAGGATTTATGAAAGTTCCTGAAAGTAGCACA
TTAGTTTTTGTCATAAATAATTTAAAGACCAGTATGAATTACAATGTACTAATACGATAT
GAACCTCAAACTCATTCCAGTTGGGAAGAAGCTACTATACTAGTGAAAAGACCCTCGCCG
ATAGACGCGGACTCTCCTTGCGCCAACGTACGACCTGAAGATGACACTATAGTTACTAAA
CTTCCGGTGGGACAACACAGTGTCTTAGTGCGACCGGCAGTATGCCTTGAGAAAAATAAG
GAAACTGAAATAAGAATTTATTTGGGAAAACAAGATGGACACTCTTCCAATAGTCGAGCG
ACAGTCTTGATCGATTCTATTGTTTTAATACCTTCATTTGATGATTTACCATTCTTGAAA
AATGGAAGTTCAGGCAGAGAAGAATTCGATCGATATAATTGTGGAGATTCCTATTATTAC
GATCTAAATAGGGAAAACATACCAGAGGTTTGCAAGAAATATCATTCAAATATCGGATTT
TATATAAGAAATGGGTCAGAACCCTGTCAGTGTGACCCTTCAGGCTCTAAGAGTCATCAG
TGTAATCCATTCACTGGTAACTGTCAGTGTGTAGAAAATATAGTCGGTGTAAGATGCGAC
CGCTGCGCCCCGGGTACATATGGATTCAGCAAATTTGGTTGTAAACGTTGTGACTGCAAC
AGCATAGGTTCTCTTGATAATTTCTGTGATGCAGCTAGCGGCCAATGTAAATGTAGAGCC
AACACATACGGCAGAGCTTGTGATCTGTGCCAGCCTGGATATTTCAATTTCCCTAACTGC
CAACAATGCGACTGCAATGGCCATGCCGTTGAATGTGATGATAAAACCGGAGCTTGTAAG
GAGTGTCAAGAAAATACAGAAGGCCACCGCTGCGAAAGATGTATTGAAGGCTATTACGGC
GATCCTAGGCTAGGCATTGACATCCCTTGTAGGTTGTGCCCTTGCCCGGGTGTTAAAGGT
GATCCGAACAAGAGTAGTCATGCTGATCGTTGTGAATTAGACCCTGAAACCAAGGATGTT
GTCTGCGACTGTAAGGAGGGGTATGCTGGTCTTCTTTGCGATGTCTGTGCCGATAACTAC
TACGGTGACCCCATGAAGGGAACCTGTGAAAAGTGTGAATGTAACGACAACACCGATATA
ACTAAACCCGGCAACTGCGATCCTTATACAGGGAAATGTCTGAAGTGTTTACATAACACC
GCCGGTGAACATTGCGAAGTTTGCGAAGAAGGCTACTATGGCAATGCTCTAGAAAAGGCC
TGCTATAAATGTAATTGCTCTGTATTAGGAACCAACTTTACCCAGAGCAACTGTGATGGA
ATAACAGGACAATGTCCTTGCTTTAATAATGTCATGGGCATAAACTGCGATCAATGTACT
GAAAATCATTGGAGGATAGCTTTGGGTACGGGCTGTGATCCTTGCGAATGTGACCCGGTC
GGTTCTATATCACCTCAGTGCAACCCATATATAGGTAAATGCGACTGTAAGCCTGGACAC
GGTGGAAGACAATGCGACCAATGTCAAGAAAACCATTGGGGTGATCCTAACATTGAATGT
TATGAATGTGACTGTGATATATACGGATCTGTTTCACAACAGTGTTCACGCGAAAATGGA
TCCTGTATTTGTAAGCCAGGAATAGGAGGCTACAAGTGTGATATGTGTGCCAGAGGTTAT
CTTGGTGAAGCACCAGAATGTAACGCCTGTGGAGATTGTTTTGATAATTGGGACAGAATA
ATAGGAGATTTAAAAATTCAAACTGAATACGCCATTGGTAATGCTAGTAAGATTAAGGTC
GTCGGTGCTACGGGAGCATATACGAGAGACTTTGAAGAAATGACTAAGAAACTCTCTCAG
GTTGAAGCCACACTAGATAGTGCGAAACAAGGCAAGAGTACAGTCAAAGAACTTTTATCT
AACGTTACTCATTTGCAGAATAAATTAAGTGAAGCTGAGAAAAAAGTTAAGGACAGTAAT
GATAATCTAAACGCTATAACATCAAAAATAAATCTGGGTAATGTAACATTGGATGGTTTA
AGAGCTCGAATTGATACATTAAAATCTAAGACGTTTGAATTAGGTAACAATGCAACCAAA
CTACAAGAGGCCAATTTAGAGGGTGCCTTAAATTTGACTCGAGAAGCGAAAGAGAGAGCA
GTGAAAGCTGCAGAAGAAGCCGAAAGCGTGCAGTCTGTTATAGCTAATACGGACAGACAA
ATAAAGAACACGGATAGATTAATAGAAATGCAATACAGTAGCTTTAATAACACACAGAAT
GAAAATGATAAAGAATTAGGGAGATTACGACAGCAATTAACTGAACTAGAAATGCAGCTA
CCAAAAATAAATGAAAAGATGTGTGGGCAAGACAGTGACAGTTGTGATATTTGTGGAGGA
GCTGGTTGTGGCAAATGTGGTGGGATATCGTGTGATCAAGGAGCCATTACCAAAGCAGAA
CAAGCATTAGATTTCGCGAATAAAACTGAACACAGAATAAAGGAGCACGAATTGACTGCT
GAAGATTTATTAAGGTCCGTTTCACAAGTAAAACAAGACACCGTCGCTGTTCGATCGAGA
GCTAAAGATTTATTCAATAGAGCGATCGATTTCAAAGCATCGGCTGAGAGGGCGACCAAT
GAAAGCCAAGAACTTACATCAGAGTTAAAAGAATTTTTATCCAAAACATACAATACACCA
GAGGAAGTTAGACAGTTGGCTACCGAGATATTAAACCTATCTATTAGCATAGAACCTAAA
GAAATAACTGAACTATCACAACGAATTAATTCTACTGTATCACAGTTAACTAATATTGAA
AATATAATAACCGAAACGAAACCTGATCTTGATAGAGCCAAGGCCCTAAAGCAAAATGCT
ACCAACGTCAACCAAGCAGCAAACTTAACTCTCGAGATGGCAAATAAAGTTCTAGAGGCT
TTGGATGAGGCTCAAGCAGCTCAGGACGCGGCAGAAAACGCTATAGACAAAGCAAATAGA
GATATAGAAGCTGCTAAGGGAGATTTACTTCCGATAGCATTAGAGACGGAACAGGCACAG
AAAAAGGCCAACGAAACGATGGATGAGGTGGAGGGTCTTCGTTCGCGGCTTTCTGACTTA
CAGAAAAATATTCTAAAAATAGAAAGTGACGCAGAGCAAGTGAAACAAGAAGCTAATGAC
GTCGTCAACAAAGCAGAAGGAGCGGAACAAAAAGCCAGACAGTTGAGACAGGACTTTAAG
CAGACGAACACGTCCCTCACCGAAAGAGCCAATCAGACTTCCAGTTCTAGAGAACGAGCT
CAGCTGCTGCTGAATCGGGCCACAAAACTCGCGAGTGACACACAGAGTCAGCTGAAGCTC
CTCGCGAACATGGAAGAACTGTACAACGATCACAACGAACAGCTCAACGACCTGGAGAAG
GAAATCGGCGAACTCAACACCAAGATGAACTATTACCTATCAGAAATAACCAAACGATCT
GACTACTACCGGTCCTGCACCACATAA
Protein sequence:
MEAEFHLTHLIIQFKTFRPAAMLVERSFDFGNTWRVYRYFAHNCHEAFPSIPRHSQRSLT
EVVCESRYSGVAPSTEGEVIFRVLPPNINVTNPYSEEVQNLLRMTNLRINFTKLHTLGDD
LLDNRAEIQEKYYYSIYEMTVRGSCSCYGHASRCLPMPGVESKNNMVHGRCECTHNTRGL
NCEYCEEFYNDLPWQPAVGKTSNACKRCTCNNHATTCHFDAAVYNKTGKISGGVCDNCQH
NTMGVNCERCMPTYYKDPRLDIQSPDVCQPCDCDPEGTTDKEVLCDDETDVANNKTAGRC
LCKANVDGLRCDRCKDGYWNFDAQNPDGCEACTCDSLGTINERGCDPATGVCFCKRHVTG
RNCDQCLPEFYGLSDSDDGCSPCDCDLGGSIDRDCDVITGQCKCRPNVTGRRCDQPLQNY
FVGALDSIVYEAESSQCNSQIDDNAIQSQLCHVVIRENYPDGRKETWTGPGFMKVPESST
LVFVINNLKTSMNYNVLIRYEPQTHSSWEEATILVKRPSPIDADSPCANVRPEDDTIVTK
LPVGQHSVLVRPAVCLEKNKETEIRIYLGKQDGHSSNSRATVLIDSIVLIPSFDDLPFLK
NGSSGREEFDRYNCGDSYYYDLNRENIPEVCKKYHSNIGFYIRNGSEPCQCDPSGSKSHQ
CNPFTGNCQCVENIVGVRCDRCAPGTYGFSKFGCKRCDCNSIGSLDNFCDAASGQCKCRA
NTYGRACDLCQPGYFNFPNCQQCDCNGHAVECDDKTGACKECQENTEGHRCERCIEGYYG
DPRLGIDIPCRLCPCPGVKGDPNKSSHADRCELDPETKDVVCDCKEGYAGLLCDVCADNY
YGDPMKGTCEKCECNDNTDITKPGNCDPYTGKCLKCLHNTAGEHCEVCEEGYYGNALEKA
CYKCNCSVLGTNFTQSNCDGITGQCPCFNNVMGINCDQCTENHWRIALGTGCDPCECDPV
GSISPQCNPYIGKCDCKPGHGGRQCDQCQENHWGDPNIECYECDCDIYGSVSQQCSRENG
SCICKPGIGGYKCDMCARGYLGEAPECNACGDCFDNWDRIIGDLKIQTEYAIGNASKIKV
VGATGAYTRDFEEMTKKLSQVEATLDSAKQGKSTVKELLSNVTHLQNKLSEAEKKVKDSN
DNLNAITSKINLGNVTLDGLRARIDTLKSKTFELGNNATKLQEANLEGALNLTREAKERA
VKAAEEAESVQSVIANTDRQIKNTDRLIEMQYSSFNNTQNENDKELGRLRQQLTELEMQL
PKINEKMCGQDSDSCDICGGAGCGKCGGISCDQGAITKAEQALDFANKTEHRIKEHELTA
EDLLRSVSQVKQDTVAVRSRAKDLFNRAIDFKASAERATNESQELTSELKEFLSKTYNTP
EEVRQLATEILNLSISIEPKEITELSQRINSTVSQLTNIENIITETKPDLDRAKALKQNA
TNVNQAANLTLEMANKVLEALDEAQAAQDAAENAIDKANRDIEAAKGDLLPIALETEQAQ
KKANETMDEVEGLRSRLSDLQKNILKIESDAEQVKQEANDVVNKAEGAEQKARQLRQDFK
QTNTSLTERANQTSSSRERAQLLLNRATKLASDTQSQLKLLANMEELYNDHNEQLNDLEK
EIGELNTKMNYYLSEITKRSDYYRSCTT