| New model in OGS2.0 | DPOGS211850 |
|---|---|
| Genomic Position | scaffold71:+ 94390-111587 |
| See gene structure | |
| CDS Length | 1290 |
| Paired RNAseq reads | 60 |
| Single RNAseq reads | 143 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001224 (1e-125) |
| Best Drosophila hit | sarcoglycan delta, isoform C (7e-59) |
| Best Human hit | zeta-sarcoglycan (1e-38) |
| Best NR hit (blastp) | conserved hypothetical protein [Culex quinquefasciatus] (1e-82) |
| Best NR hit (blastx) | conserved hypothetical protein [Culex quinquefasciatus] (1e-65) |
| GeneOntology terms | GO:0008307 structural constituent of muscle GO:0016012 sarcoglycan complex GO:0007016 cytoskeletal anchoring at plasma membrane GO:0007498 mesoderm development GO:0016021 integral to membrane GO:0045214 sarcomere organization GO:0060047 heart contraction GO:0043034 costamere |
| InterPro families | IPR006875 Sarcoglycan complex subunit protein |
| Orthology group | MCL11124 |
Nucleotide sequence:
ATGGAAGATAAAACCTTGAGCCAGAAACGACACGCGCCGGCGACCAGGAACCACATCGTC
TATACCGACCACAAAGGCAGAAAGAACAAGTTAAAGACGAAGGTTCGTGGAGACGATCCG
CGCGACGACCGTGAGGGTTGCGATCTCGATCACTTTCACTGGAAGTGGGTGTGGGGGTGG
CGAGGTGTTGTAAGTGGAGGGGGGGGGGAGAGTGTTGTAGGTGGGGGGGGGGAGGAGGAG
GATGCGATATCTCTTTGTGTTAACGTCAGTACTTTTGAATGTAGGACCGGAGCGCCACCA
GACCTGTCTGCGTTCTCTGACTCGGGGACCGCTGCGATCGAATGTCTCATACAGACTGAT
ACAAAGATCCCGTACGCGGACAAAATCACCCCGGAGCCGATCCTGAACAAAAACGGAGGG
CGCGATACAAAGGCGGACTCCATCAGGAACAGTTATAATAGCCAATTCAAAGTTGGCATT
TACGGCTGGAGAAAGAAATGTCTCTACATTCTAGTCATGACGCTGATGCTTATGATGATT
GTCAATCTCGCCTTGACGCTGTGGATTCTCAAAGTATTGGATTTCAATTCGGAAGGGATG
GGTCAGCTCCGTATAGTGCCGGGTGGGCTGCAGCTGCTGGGCCAGGCTCTCGTGCTGGAC
TCCCTGTTCGCGTCCAGCATCAAGTCCCGCCGCGGCCAGCCCATCGCCATCGAGTCCTCC
AGAAACTTTACGATCTCAACCAGAGACTCGCACGGCATGACACAGACCAGACTATTCTTA
GGTCATGATCGTCTAGAAGTGAACGTGGGTAAGCTGGAGGTGCGGGATAGTAGGGGAAGC
TTGGTGTTGGGGGCGGAGCGGGGCGCCGTCACCGTGGGCGCTGACAACCTGGTGGTGGCG
AGTCCGGCGGGCGCCTCCTTCACCACGGCCGTGCAGACTCCGCTCGTCAAATCGCCACCC
TCCAAGCCCTTGACACTGGAGTCACCAACTCGTTCTCTGGAGATGCACGCGGCGCAGAGC
ATCTCCATGGAGTCTCGTGCCGGAGACATCAGCGCCAGCTGCCTCACCACCTTCAGACTG
AGATCCATCGCTGGTGCGATAAGACTGGACGCTCCGAGCATATACATGCCCAAGTTGAAG
TCGGCACTACCCCTGCCCCCGTCGGCGCACACCCACGACCCGCATCATCAGAATATCTAC
CAGCTGTGTGCGTGCGCCAACGGCAAGCTGTTCCTGGCGCCACCTCACGGAGTCTGCGCG
GCCAGAGATGAAAGCTTGATCTGCCGATGA
Protein sequence:
MEDKTLSQKRHAPATRNHIVYTDHKGRKNKLKTKVRGDDPRDDREGCDLDHFHWKWVWGW
RGVVSGGGGESVVGGGGEEEDAISLCVNVSTFECRTGAPPDLSAFSDSGTAAIECLIQTD
TKIPYADKITPEPILNKNGGRDTKADSIRNSYNSQFKVGIYGWRKKCLYILVMTLMLMMI
VNLALTLWILKVLDFNSEGMGQLRIVPGGLQLLGQALVLDSLFASSIKSRRGQPIAIESS
RNFTISTRDSHGMTQTRLFLGHDRLEVNVGKLEVRDSRGSLVLGAERGAVTVGADNLVVA
SPAGASFTTAVQTPLVKSPPSKPLTLESPTRSLEMHAAQSISMESRAGDISASCLTTFRL
RSIAGAIRLDAPSIYMPKLKSALPLPPSAHTHDPHHQNIYQLCACANGKLFLAPPHGVCA
ARDESLICR