| New model in OGS2.0 | DPOGS200543 |
|---|---|
| Genomic Position | scaffold172:+ 2740-8832 |
| See gene structure | |
| CDS Length | 1674 |
| Paired RNAseq reads | 1044 |
| Single RNAseq reads | 2562 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010782 (1e-105) |
| Best Drosophila hit | hormone receptor-like in 96 (3e-63) |
| Best Human hit | vitamin D3 receptor (2e-23) |
| Best NR hit (blastp) | PREDICTED: similar to nuclear receptor nhr-48 [Tribolium castaneum] (6e-150) |
| Best NR hit (blastx) | PREDICTED: similar to nuclear receptor nhr-48 [Tribolium castaneum] (2e-127) |
| GeneOntology terms | GO:0005634 nucleus GO:0003700 sequence-specific DNA binding transcription factor activity GO:0004879 ligand-dependent nuclear receptor activity GO:0003677 DNA binding GO:0008270 zinc ion binding GO:0006355 regulation of transcription, DNA-dependent GO:0043565 sequence-specific DNA binding GO:0003707 steroid hormone receptor activity |
| InterPro families | IPR001628 Zinc finger, nuclear hormone receptor-type IPR001723 Steroid hormone receptor IPR000536 Nuclear hormone receptor, ligand-binding, core IPR013088 Zinc finger, NHR/GATA-type IPR008946 Nuclear hormone receptor, ligand-binding |
| Orthology group | MCL16081 |
Nucleotide sequence:
ATGGATAGTGAGACTATAAAGACGGAAAGTGTGAGTGAACAGAAAAAGGAGTTAACACCA
AATTTACAGAAGATATGTCTCGTCTGCGGTGATAAGGCACTTGGTTATAATTTCAATGCC
ATTTCTTGCGAGAGTTGTAAGGCGTTTTTTCGACGTAATGCTTTAACTAATAAGGAGTTC
AAATGTCCTTTTACTAATAATTGTGAAATAACCCTCGTAACGAGGCGATTTTGTCAGAAA
TGTCGTTTAGAGAAATGTTTTTCTGTTGGAATGGTGAAGGAGTTTATTATGTCCGACGAG
GACAAGGCGGAAAAGAGACGAAAAATAGAAGAAAACCGCGCCAAAAAGAGACAACTACAG
GATTCGGATGACAGTGTGTCTAGTTCTAAGAATTTTAGACGTGATGTTGAGAGTCCTTAC
ACCACACCCGTACAAGAGAGTACAATACAGTATGATGTTTTAAACAGTACAACATGCAGT
CCTCACAGCTCAGCGGAATCCCCCTTGAGCACCGATGTAGATTCTATGCCAACACCAGCC
TATGGCCGATATGTGCCGGTGCAGACAGAGCTATTCACAGTAAAGGGTTACCCACCAGAA
GAGAAGACAAATCCAAACCAGAGATATTATGAGCCCCGGCAAGAACATTACATGTGTGAC
AGTATGGATGGCATATACGAACAAACCAAACAAAATAGTATAAGGTCGATCCTGACCAAC
GGCGAAGGTCTCCCTCATCACCAGGACACGGAGCACGTGTGCGAGGAGATGCCGTCCACC
AGCAACCCTGAGGTTAACAAGGCCAGGGACATACTGCAAGACGTCGAGAGGATAGAGCCC
AACTCTATGGAGTCAATACTGTGCGAGGCGATTAAGCTGGAGTTCGGGGCTTACTCTTCC
GTCAACAGTTGTAGTGGATCATCCAGAGAATTGAATGAGGTGGAGAGAGCCAAGCTGAAC
GAGCTGATCGTCGCCAACAAAGCGCTCCACGCTCCCATAGACGACGACGTGTCACAACTG
ATCGGAGACGCGGCCACCGCCGGCCTCAAGGTCGGCGAAGGAAAACATGACCCTCGCCTC
ATAACGTTGGTCAACCTGACAGCCGTCGCCATACGGAGGCTCATCAAGATCGCCAAGAAG
ATCAACGCGTTCAAGAACATGTGCGAGGAGGACCAGGTGGCGCTCCTGAAGGGAGGCTGC
ATAGAGATGATGGTGTTGCGGAGCACCATGACCTACGACGGACAGAGGAACCAGTGGAAG
CTGCCTCACAGTCACAAGCAGTACGGCAGCATCCAAACGGACGTGCTGAAGCTGGCCAAG
GGGAACATCTACCGCAGCCACGAGGCCTTCATCAGCTCCTTCGAGCACAGGTGGCGCACC
GACGAGAACATCATCCTCATCATGTCCGCCATACTGCTGTTCACGCCCGACCGGCCGCGC
GTCGTGCACCGCGACGTCATCAAGTTGGAACAGAACTCGTACTACTACCTGCTCCGGCGC
TACCTGGAGAGCTCGTTCGCGGGCTGCGAGGCGAAGGCCACGTTCCTCAAGCTGATCGCC
AAGATCCTGGAGCTGAGGAAGCTGGCCGAGGAGGTGACGGGCGTCTACCTCGACGTGCAC
CCCTTGGAACCGCTGCTCGTGGAGATCTTTGACCTCAAACACCACGCGGCATGA
Protein sequence:
MDSETIKTESVSEQKKELTPNLQKICLVCGDKALGYNFNAISCESCKAFFRRNALTNKEF
KCPFTNNCEITLVTRRFCQKCRLEKCFSVGMVKEFIMSDEDKAEKRRKIEENRAKKRQLQ
DSDDSVSSSKNFRRDVESPYTTPVQESTIQYDVLNSTTCSPHSSAESPLSTDVDSMPTPA
YGRYVPVQTELFTVKGYPPEEKTNPNQRYYEPRQEHYMCDSMDGIYEQTKQNSIRSILTN
GEGLPHHQDTEHVCEEMPSTSNPEVNKARDILQDVERIEPNSMESILCEAIKLEFGAYSS
VNSCSGSSRELNEVERAKLNELIVANKALHAPIDDDVSQLIGDAATAGLKVGEGKHDPRL
ITLVNLTAVAIRRLIKIAKKINAFKNMCEEDQVALLKGGCIEMMVLRSTMTYDGQRNQWK
LPHSHKQYGSIQTDVLKLAKGNIYRSHEAFISSFEHRWRTDENIILIMSAILLFTPDRPR
VVHRDVIKLEQNSYYYLLRRYLESSFAGCEAKATFLKLIAKILELRKLAEEVTGVYLDVH
PLEPLLVEIFDLKHHAA