| New model in OGS2.0 | DPOGS210759 |
|---|---|
| Genomic Position | scaffold2294:- 24561-27769 |
| See gene structure | |
| CDS Length | 2754 |
| Paired RNAseq reads | 314 |
| Single RNAseq reads | 845 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006237 (7e-33) |
| Best Drosophila hit | DNA ligase III (8e-167) |
| Best Human hit | DNA ligase 3 isoform alpha precursor (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to rCG33581 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to rCG33581 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0005515 protein binding GO:0033151 V(D)J recombination GO:0008270 zinc ion binding GO:0005622 intracellular GO:0006281 DNA repair GO:0007049 cell cycle GO:0007283 spermatogenesis GO:0006260 DNA replication GO:0005654 nucleoplasm GO:0003909 DNA ligase activity GO:0016874 ligase activity GO:0046872 metal ion binding GO:0003677 DNA binding GO:0007131 reciprocal meiotic recombination GO:0005634 nucleus GO:0000166 nucleotide binding GO:0005524 ATP binding GO:0051301 cell division GO:0003910 DNA ligase (ATP) activity |
| InterPro families | IPR012310 DNA ligase, ATP-dependent, central IPR012308 DNA ligase, ATP-dependent, N-terminal IPR012309 DNA ligase, ATP-dependent, C-terminal IPR001510 Zinc finger, PARP-type IPR000977 DNA ligase, ATP-dependent IPR016027 Nucleic acid-binding, OB-fold-like IPR001357 BRCT IPR016059 DNA ligase, ATP-dependent, conserved site IPR012340 Nucleic acid-binding, OB-fold |
| Orthology group | MCL16037 |
Nucleotide sequence:
ATGACAGAATCTACGCCGTTTTACGTTGACCGAGCTAAGGTTGGACGAGCCAACTGTAAA
GGGTGCAAGGCACACTGCGAGAGCGGACAGTTACGTATAGCAAAATTGGTCGCTAGTCCA
TATGGCGAAAACCAACAAATGAAGTCATGGCACCATGTAAACTGTTTGATGAATGTTTTA
TTAAAACAACGACCTACCACTAAACGGATAGATTCTATCGATGATATTGGAAACTGGGAT
AATATAAGCAAAGAGGACCAAGAATTTATAATTAAGGAAGTTAATCAGATGGAAAAGACA
TATGCTGATAAGTATAGTGGAAAATATACAGCTAAAGTCATAAAAAATGAACATTCTCAA
ACAGAACTTAAGTCGCCTAATATTTCTTTGAATGATGAAATAAAACTGAAGACAGAAGAT
GACAAATTCTCAATATTCTTTACTTTATGTAAGGAAATATCCAAAGTTGATGCATATACT
GAGAAAACTGCTATAGTTAATAATTTTTTTACCAATGGTTGTGATGGTAAAAAGTTTAAC
GGAGATCTTGTTTTATGGTGTAAGTTCCTTCTACCTCAAGTATCCAAGAGAGTTTATAAT
TTAAAAAGCAAACAGCTAATTAAATTATTTGCTAGAATATTCAATACAGATCATGATGAT
ATGCTCACACACTTAGAAAATGGTGATATAGCCGATACATTACAAAATTTTTTTCAAAAA
TCAAACACATACAAACCAGCAACACAAAGTTCTTTAACATTACAAATTGTTGATGACTTC
CTCCACGAACTTTCAAAATTGACAAAAGAAGAAGAACAAATATATCACTTTAAAAAAATA
ATAAAAAACTGTACTTTGGATGACCTTAAAATGCTTATACGCTTGATAAAAGGTGATCTG
AGGATAAATGCTGGTCCAAAACATATACTTGAAGGTGTGCACCCTGATGCATATAGCGTT
TTCCAAACATCCAGGGATTTGGATATGGTTTTAGAAAGAGTCTTGCCACAAAGCAGTGAA
GTCAAACATAAAGATGCAATGCATAGAAATGTTCAGGCCAAACTCAGTATTATGACACCA
GTACTGCCAATGTTAGCAGAAGCGTGTAAATCTGTTGAAATGGCTATGAAAAAGTGTCCC
AATGGAATGTTCTCTGAAATAAAGTATGACGGAGAAAGAGTACAAGTACATAAAAAAGGA
AATGAATTTAAATATTTCTCAAGAGCTCTAAAGCCTGTAATGGCTCATAAAGTCAGTCAT
TTCAAGGATTACTTGCCTCAGGCGTTTCCTAAAGGGGTTGATTTAATATTAGATGCCGAG
GTCTTAATGGTAGACTTAAAAACAGGCAAGCCTTTACCTTTCGGTACTTTGGGCATACAT
AAACAGTCTGAATTCAAAGATGCTGGAGTGTGCTTATATATTTTCGATTGCCTATATTAC
AACGGCGAAATTTTAATAGATATGCCAATAAAAAAGAGACGCCAAATATTACATGATAAT
ATGGTTGAAATTAAAAACCATGTGATGTTCTCAGAGCAGGAACTCATATATAAACCATCT
GATTTAGCCAATATGATTGCAAAGGTATTGCAGCTGGGCTTGGAAGGTCTAGTTCTTAAA
GATTTGGAATCAACATATGATCCTGGAAAGAGACATTGGTTGAAAGTAAAAAAGGATTAT
TTGTTTGATGGCGCTATGGCAGATACAGCTGATCTGATTGTTTTAGGAGCTTGGTTTGGT
ACTGGAAAGAAAGGTGGTATGATGTCAGTATTTCTAATGGGATGTCTGGACAAATTTAGA
AACAAATGGGTGACCGTTACTAAAGTGCACACCGGTCATGATGATAGTACGTTAGAAAGA
TTACAAAAGGAATTAAGTCCCTTGATGGTAAAAATATCTCAAGATTCCAATAAAGTGCCT
AATTGGTTGGACTGTAAGAAGGGAATGATTCCAGATTTTGTTGCTGCTGATCCTAAGAAA
CAACCTGTTTGGGAAATTACTGGAACCGAGTTGACAAAAGCTAACTTACATACAGCCGAT
GGTATATCTGTTAGATTTCCTAGAGTGACACGTATAAGGGATGACAAAAATTGGGAAACT
GCAACAAATTTGGAAGAACTAAAACATTTATATAAAGCTTCAAAAGAGAAAACCGATGTC
AGTCTTTTAAATAAACTAGCTGCTACCGCGGATGACTATGTACCACCTGAGAAAAAACCA
AAACAAAGTCCTAAGACAGCTAAAAACAAAACGAGTCCAGTATCAAATACTTTGGACAAA
TGTTTTGCTAAGTATGCAAAAAGGAATGAAAAGTCCCCAATTAATCAACATAATGACAAA
AAGAATGCAGATTCTGATGATGATTCAGACAGAACAGACATTGAAGACACAAGTCCTATG
AAAAAAGATATCAAACCTAAACTACTACCTGAGAATCCTCTACCAGATGTCTTTATAAAC
AAACGGCTTGGTTTCTATCCAGATTTTATAAGCATACCAGAAAGGGAAAGGTTTCATTTC
GAAAGACATTGGGTAGCTTACGGTGGCATTGTAATTAAATCATTAAAAAAAATTGATGTA
GATTATGTTATACATAACAATAATAAAATTGGTTTCAGTGAAATGATGAAATTAAAGAGA
AAACTACCGCCAGATGTCAGACATGTTACTAAAAGTTGGTTGATAAAGTGTATAAATTGT
GTTAAATTGTGTGATACTAAGAATTATACTGTCATAGTAAAACCATTCCAATGA
Protein sequence:
MTESTPFYVDRAKVGRANCKGCKAHCESGQLRIAKLVASPYGENQQMKSWHHVNCLMNVL
LKQRPTTKRIDSIDDIGNWDNISKEDQEFIIKEVNQMEKTYADKYSGKYTAKVIKNEHSQ
TELKSPNISLNDEIKLKTEDDKFSIFFTLCKEISKVDAYTEKTAIVNNFFTNGCDGKKFN
GDLVLWCKFLLPQVSKRVYNLKSKQLIKLFARIFNTDHDDMLTHLENGDIADTLQNFFQK
SNTYKPATQSSLTLQIVDDFLHELSKLTKEEEQIYHFKKIIKNCTLDDLKMLIRLIKGDL
RINAGPKHILEGVHPDAYSVFQTSRDLDMVLERVLPQSSEVKHKDAMHRNVQAKLSIMTP
VLPMLAEACKSVEMAMKKCPNGMFSEIKYDGERVQVHKKGNEFKYFSRALKPVMAHKVSH
FKDYLPQAFPKGVDLILDAEVLMVDLKTGKPLPFGTLGIHKQSEFKDAGVCLYIFDCLYY
NGEILIDMPIKKRRQILHDNMVEIKNHVMFSEQELIYKPSDLANMIAKVLQLGLEGLVLK
DLESTYDPGKRHWLKVKKDYLFDGAMADTADLIVLGAWFGTGKKGGMMSVFLMGCLDKFR
NKWVTVTKVHTGHDDSTLERLQKELSPLMVKISQDSNKVPNWLDCKKGMIPDFVAADPKK
QPVWEITGTELTKANLHTADGISVRFPRVTRIRDDKNWETATNLEELKHLYKASKEKTDV
SLLNKLAATADDYVPPEKKPKQSPKTAKNKTSPVSNTLDKCFAKYAKRNEKSPINQHNDK
KNADSDDDSDRTDIEDTSPMKKDIKPKLLPENPLPDVFINKRLGFYPDFISIPERERFHF
ERHWVAYGGIVIKSLKKIDVDYVIHNNNKIGFSEMMKLKRKLPPDVRHVTKSWLIKCINC
VKLCDTKNYTVIVKPFQ