New model in OGS2.0 | DPOGS203530  |
---|---|
Genomic Position | scaffold1232:- 124-11556 |
See gene structure | |
CDS Length | 5478 |
Paired RNAseq reads   | 7125 |
Single RNAseq reads   | 17936 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA009172 (1e-07) |
Best Drosophila hit   | CG33087 (0.0) |
Best Human hit | prolow-density lipoprotein receptor-related protein 1 precursor (0.0) |
Best NR hit (blastp)   | hypothetical protein TcasGA2_TC009548 [Tribolium castaneum] (0.0) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC009548 [Tribolium castaneum] (0.0) |
GeneOntology terms    | GO:0005041 low-density lipoprotein receptor activity GO:0005509 calcium ion binding GO:0016020 membrane |
InterPro families    | IPR002172 Low-density lipoprotein (LDL) receptor class A repeat IPR000033 LDLR class B repeat IPR013091 EGF calcium-binding IPR001881 EGF-like calcium-binding IPR006210 Epidermal growth factor-like IPR000742 Epidermal growth factor-like, type 3 IPR000152 EGF-type aspartate/asparagine hydroxylation site IPR013032 EGF-like region, conserved site IPR018097 EGF-like calcium-binding, conserved site IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site IPR011042 Six-bladed beta-propeller, TolB-like |
Orthology group | MCL10054 |
Nucleotide sequence:
ATGAGTCCTAGGGGTCCAGTGGCCCTCAGCAGCGCGTGCGGGCCGGACTCGTTCCGCTGC
GTGTCCGGGGAGTGCGTGCCCGCCGTGTCCCGGTGCTCGGGCTCCCCGCAGTGCGCGGAC
GGCTCGGACGAGCGAGGCTGCGACTGTGCCCCGGGAACCTTCCGCTGTGCGCTCTCCGAG
ACCTGTCTCCAGACTAGTCTGTACTGTGATGGTGATGCCGACTGCGAGGACGGGTCCGAC
GAGCCTCCGGGCTGCTCTGCTCCCGTGACCACGAGCACGGCCTCCCCGGTGGGGTCTATA
ATCCCCCATACCTCCCACAACTCCTCGTTCGCCAGCGAGCTGTGTGCCGGCGAGCCGGGG
TCGTTGTACTGCAGGGGTCGCTGCATCCCCGCGGCTCTCGTCTGCGACGGCCGCGACCAC
TGCGAGGACCAGCCTGACGGACCCGGCAGCGATGAGGACCCCGTCATGTGCTCGTCGTTC
GCGGCGTCGTTCGGGTCGTCGGCGGAGGCGGCGGTGTCGGCGGGCTGTGTCCGCGGCGAG
TGGCGCTGCGGTAACGGCGCCTGTGTGCCCCGCCGCGCCCTGTGCGACGGACGGGACTCC
TGCGGCGACTTCACGGACGAGTGGCATTGCAACATCAACGAATGCCTCGTCCTCAACGGC
GAGTGTGGTCACAACTGCACGGACCTGCCGGTGGGGCGCGCGTGCTGGTGTAGGGCTGGC
TGGAGGCTATCGGGCCGAGGCTGCACGGATGTGGACGAGTGTCGCGAGGACCGGCCCTGC
GACCACGGCTGTAGGAACACCCCCGGCAGCTTCGTCTGCACCTGCAGCAGGGGATACAGG
CTGATGGAAGATGGATCCAGCTGCATGCCTGTGTCTGACATAAAAGCATCTTTGATATTC
ACAAACCGCTACTACATCCGTCGCACCAGCATCGTGGAGGAGGAGAGCTCGGAGGCGGCT
GTGACGTCACTGCTCGTCCACAACCTCACTAACGCGGTAGCGCTGGACGCGCTGTGGGAC
CGGGGCTGTCTGCTGTGGAGTGACGTCACGCGGCTGGGCTCCTCCATCAAGAAGCTGTGC
GGGGTGACGGAGGGCGAGGCAGCGGCGGACGCGGGGCGGGCGGGGGCGCGGGTCCTCGCG
GGGGCGACGCTACAGAACCCCGACGGGCTGGCGGCGGACTGGGTGGCCGGAAACGTTTAC
TGGTGCGACAAGGGTACCGACAGCATCGAGGTGGCCAGGCTGGACGGCAGACATCGCCGG
GTGCTGCTGCGGGAGGGACTCTCCGAACCCAGGGCCCTCGCACTGCTGCCGCAACAAGGA
TACATGTACTGGTCCGACTGGGGCTCGTCTGCTCACATCGGCCGCGCCGGCATGGACGGC
TCGGGACCCTCCATCATCATCCGAGGTCTGGGCTGGCCCAACGCCCTGTCGCTGGCGCCG
GCCTCCGGGGAACTGTTCTTCGCTGACGCCAGGGAAGACTACATAGCTGTGGCTGATCTA
GACGGATCACATGTGCGAGTTTTGTTCTCAAGAGATCGTATGCCGTGGCTGCCCCTGCAC
CACGTGTTCGCGCTGGGCGTGTGGGCCGGCCGCGTGTACTGGACGGACTGGGAGACGCGC
GCGCTGCACTCCTGTAGGAGGACACCGCACCGAGCGTACAATGAGTCCTGGGGCGGCGGG
CCGTCTGCGGGCGGCGCTTTGAGGTGTCGTGTGGAGGCGCGCGCCGTTCACAAACCTATG
GACTTGCGGGTGTTGCATCCCGCACGACAACCGCCGCAAAGGGAACTAAAGGCGCTCTGC
GAGAAATTAAACTGTACGGGTCTGTGCCTGTTGTCTCCGCTGGAGGGCGGCGCCACTGCT
CACTGCGCGTGTCCCGAACACTTCGTGCTGGGAGCGGACGGTCGCTCGTGTTCCCCTAAC
TGCACGTCCGCCCACTTCGTGTGTCGCTCGTCCTTGAAGTGTATCCCGTTCTGGTGGCGT
TGCGACACACAGGACGATTGCGGCGACGGGTCGGACGAGCCGGCCTCGTGTCCCGCCTTC
CGCTGCTCCCCGGGACAGTTCCAGTGCGCCAACTCCCGCTGCGTCCACCCCGCCCACATA
TGTGACGGCGTGCAGCAGTGCGGGGACGGTAGCGACGAGCGGGACTGCGACGCCTTCACG
TGCCTCGCCGCACAGTTCAAGTGTCCGGCGGCCGGCCGGGCGCCCGCCAGGTGCGTGCCC
TCCGAGGCGCGCTGTAACGGAGAGAAAGACTGCGCCGGGGGCGAGGACGAGAAGGACTGC
CCGCCCGTCAGCTGTCCGCCGCATACTTTCCTTTGCGGCTCGGGTGCGTGTGTTCCTCAA
GTGTGGGTGTGTGACGGAGACGCCGACTGTAGCGACGGGTCCGACGAGCGCGGCTGCTCC
TCCCGCCAGTGCGCTCGCGGGGAGTTCCGTTGTGCGTCGGGTCGTTGCGTGCCGCGAGAG
TGGCTCTGTGACGGCGAGGCTGACTGTCCCGCGCTGGAAGACGAGGCACGCTGCGACGCT
CATGCCGCCTGCGAGCCCACCTATTTCCGCTGCGCTGATATGCGCTGCATCCCCGGGCGC
TGGCGGTGCGACTTCGAGGAGGACTGCGCCGACGGCTCGGACGAACGAGGCTGCACGCCC
AGGAACTGCTCCGAGTCTGAGTTTCGCTGCGATAATGGAGAATGTATCAGAGGAGCGCTG
CGGTGCTCGGGGGCCGCGGACTGCGCCGGCGGGGAGGACGAGCGAGCCTGCGCCGCCGCC
TGCCCGACCAGCGCTAAACTCTGCACGCACTCGCAGGAGTGCCTCCAAAATGAGTGGTGG
TGTGACGGGGAGGTGGACTGCGCAGATGGCTCGGACGAGGACAACTGTACTTCTAGCGCC
ACGACGATGGCCACTCACGCAGCTGCGACCCTGGATTGCGGGACACGTTTACGTTGTGGT
GGTGTCGGTGGTGGGGGGTGGTGCGCTCCGAGCGCGTGGCGCTGCGACGGTCGGCGTGAC
TGTGCCGACGGGTCGGACGAGGAGGCAGGGATGTGTCGACACACCGTCTGCCCTCCGCCC
ATGGTCCGCTGCGGAGAGAACACCTGCATCCCACCACATCTGCTCTGCGACGGTTTCAGA
GATTGCGCTGATGGCTCCGACGAAAATCCACTCCTTTGTAGCCGTAGCCGCAGTCGCTCG
GAGTCCTTGTGTCCTCGTGACCAACAGCTATGCGGGGACGGTCGATGCGCGCCAGCGAAC
GCTCCCTGTCCCTCCGAGAGCGGCTGCACTTGGCGCACGTGCTCGCAGCTCTGTCTGCCC
AAGCACGCGCACAATCACACCTGCAAATGCGTGGCCGGATACAAGCAACATCAGCTGGCG
GACGGAACCTTCACGTGCGAGGCCACAGGTGAAAAGGCGAAAGTGTTGGTAGCATCGAGC
GGGGCCCTCAAACTGCTGGAGCTTCACAAGCACGAACACGAGCCGCTGGCCGCCACGCCG
CACTACAACGAGACCGTGGAGATAGTAAGCGTGTGCTCGGCTCCGGTGGGCGGCGTGTGG
TGGGCGTGGTGGGCGGACGGCCACGGCCGCATCCGTCGTGTCCGGCTCGTGGCGGCTCGT
GGTAAGCTGTCCCCCGGAGTCCCGGCTCGGTCGCCGCCGCTGCCCGACTCGTCACCAGAC
ATGCGCGAGGCGGAGACCGTGGTGGAGGACGCCGGCACTGTCCGCGGGGTGGCCGTGGAC
CCCCTGGCCGAGAGACTCTACTGGACCAGTGTTCACGGGACGGAGGGGGCCTGGGTGGTG
GGAACCGTGCACGCTGCCATGTTGGACGGCAGGCGACGGGTCACTCTGTGGAGACAACCG
GGAGCAGAGCCCGATGACCTGGTCATATCACTGGAGACTGGCGAGCTTTTCTGGTCGGAA
CGTGGGTCGTGGGGTCGCGTGTGGAGCGCCCGTCTCCACGGCGGGGGAGTCCGCACCGCA
GTCTCTCACGGTCTGCGGCGGCCGACCGCCCTGGCGCTGCTCGGCCCCGCCCTCAGACTC
TTCACCCTGGACGCTCACCGCGGCGTGCTACGCAGCGACGCCCTGAGCGGGACCGACACC
GTCGTGCACGCCGTGTTCGAGTCGGACGCCGCGCCACAACACGACGTGCCCACATATAAA
GACGGTGCTCCGGTATCGCTGAGCGGTCGGTCGTGTTCCCGTATGGTGGTGTGGGAGGAG
CACGTGTGGTGCGGCACTCCGCGGGCCGATGACAGGCACGGCGCCGCGGGGGCCGGGCGG
GCGAGGGGCCGGCGCCCCGCCTCGGTCCACCTGCCGCGACACAGGGCTCCTGTGTCCGCC
CTGGCTGTACTTCACCCCGCTCTGTTCTCTATACTCGCCAACGCGGAGGATCCCTGCAAG
CTGTCCGACGGCCGGGAGTCCTGTCACCCCAGCGCTCTGTGTGTGCGGACAGGCCTTAAG
GAGGGCGAGGCGCGGGCCTGCCTGTGTCCCGACGGACTGCAGCCCACCACCGACATCAAC
GATGATGTGGTGAGGTGCGTGGTGTCGGTGTCTACCCCGTCTCCCCCCTGCTCTTTGCCG
TGTTCCCCGGGCGCGTGCGTGGTGCTGGGCGGGCAGGCGGCGTGCTCGTGCCCCGCGCTG
TTCTCCGGCTCGCTGTGTCAGCACTACCGCTGCGTGGACCACTGCGGACCCCACGCCCGC
TGTCACGTGCTGCCCGAAAACGATCACGCTCACGTCGGCGACCACGACCTCCCGCCCTTG
ACTTGCACATGTTACCCGGGTTGGACCGGGGAGCGCTGCGACAGGCAGATAGAAGCGAGC
GACACGCGCGACAACGAGGCGCACACGGACGACACGCGACACGAGGACCGGGGCGGGGCA
CACGGGGCGGAGGACGAGTGCGCGAGGTGTGAGAACGGCGCCTCCTGCGAGAGGGGCCCG
GGCGGCGTCACGTGTCGCTGCACATCGCAATATACCGGTCCTCGCTGTACGGAGTGCGCC
GGCGGAGCCCCGGGCGCCGCGTGTCGCCAGAGAGAAGCCGAGCTGTGCCGAGACTACTGC
TACAATAATGGCTCGTGTTCGTTGTCGGCGGGCGCCGTGGCCGGGGAGCGTGTGGCGCAG
TGCTCGTGCGTGGCGGGCTGGACCGGCGCCAGGTGTGAGCTGAGAGATGATGCTGCTGGA
GGGACAGCTGAAAGTACATATGACTCGGAAAAGATCACATTGGTACTTGCCAGGTTTCGA
ACCCGCGCCCTCGTGTATGAGAGGCGGGCCTTTAACATCCAGGCCACAGGAATCGTTAAA
GGATATGTAAACATAGATAGTAAGATCTTAGCACCACGACTCGAGTCAGGACGCGATGGC
TCAGACGGTGAAGTCGCTGGGACGGTGTACGCCAAAGGTCGCGGGTTCAAATACAGCTCA
TATAAGTACATAAAATTTAATTTAACTGACACTTTTCTCGTCACGGATGCGGAGACTGTG
ACTGTTAACGTCACGTAA
Protein sequence:
MSPRGPVALSSACGPDSFRCVSGECVPAVSRCSGSPQCADGSDERGCDCAPGTFRCALSE
TCLQTSLYCDGDADCEDGSDEPPGCSAPVTTSTASPVGSIIPHTSHNSSFASELCAGEPG
SLYCRGRCIPAALVCDGRDHCEDQPDGPGSDEDPVMCSSFAASFGSSAEAAVSAGCVRGE
WRCGNGACVPRRALCDGRDSCGDFTDEWHCNINECLVLNGECGHNCTDLPVGRACWCRAG
WRLSGRGCTDVDECREDRPCDHGCRNTPGSFVCTCSRGYRLMEDGSSCMPVSDIKASLIF
TNRYYIRRTSIVEEESSEAAVTSLLVHNLTNAVALDALWDRGCLLWSDVTRLGSSIKKLC
GVTEGEAAADAGRAGARVLAGATLQNPDGLAADWVAGNVYWCDKGTDSIEVARLDGRHRR
VLLREGLSEPRALALLPQQGYMYWSDWGSSAHIGRAGMDGSGPSIIIRGLGWPNALSLAP
ASGELFFADAREDYIAVADLDGSHVRVLFSRDRMPWLPLHHVFALGVWAGRVYWTDWETR
ALHSCRRTPHRAYNESWGGGPSAGGALRCRVEARAVHKPMDLRVLHPARQPPQRELKALC
EKLNCTGLCLLSPLEGGATAHCACPEHFVLGADGRSCSPNCTSAHFVCRSSLKCIPFWWR
CDTQDDCGDGSDEPASCPAFRCSPGQFQCANSRCVHPAHICDGVQQCGDGSDERDCDAFT
CLAAQFKCPAAGRAPARCVPSEARCNGEKDCAGGEDEKDCPPVSCPPHTFLCGSGACVPQ
VWVCDGDADCSDGSDERGCSSRQCARGEFRCASGRCVPREWLCDGEADCPALEDEARCDA
HAACEPTYFRCADMRCIPGRWRCDFEEDCADGSDERGCTPRNCSESEFRCDNGECIRGAL
RCSGAADCAGGEDERACAAACPTSAKLCTHSQECLQNEWWCDGEVDCADGSDEDNCTSSA
TTMATHAAATLDCGTRLRCGGVGGGGWCAPSAWRCDGRRDCADGSDEEAGMCRHTVCPPP
MVRCGENTCIPPHLLCDGFRDCADGSDENPLLCSRSRSRSESLCPRDQQLCGDGRCAPAN
APCPSESGCTWRTCSQLCLPKHAHNHTCKCVAGYKQHQLADGTFTCEATGEKAKVLVASS
GALKLLELHKHEHEPLAATPHYNETVEIVSVCSAPVGGVWWAWWADGHGRIRRVRLVAAR
GKLSPGVPARSPPLPDSSPDMREAETVVEDAGTVRGVAVDPLAERLYWTSVHGTEGAWVV
GTVHAAMLDGRRRVTLWRQPGAEPDDLVISLETGELFWSERGSWGRVWSARLHGGGVRTA
VSHGLRRPTALALLGPALRLFTLDAHRGVLRSDALSGTDTVVHAVFESDAAPQHDVPTYK
DGAPVSLSGRSCSRMVVWEEHVWCGTPRADDRHGAAGAGRARGRRPASVHLPRHRAPVSA
LAVLHPALFSILANAEDPCKLSDGRESCHPSALCVRTGLKEGEARACLCPDGLQPTTDIN
DDVVRCVVSVSTPSPPCSLPCSPGACVVLGGQAACSCPALFSGSLCQHYRCVDHCGPHAR
CHVLPENDHAHVGDHDLPPLTCTCYPGWTGERCDRQIEASDTRDNEAHTDDTRHEDRGGA
HGAEDECARCENGASCERGPGGVTCRCTSQYTGPRCTECAGGAPGAACRQREAELCRDYC
YNNGSCSLSAGAVAGERVAQCSCVAGWTGARCELRDDAAGGTAESTYDSEKITLVLARFR
TRALVYERRAFNIQATGIVKGYVNIDSKILAPRLESGRDGSDGEVAGTVYAKGRGFKYSS
YKYIKFNLTDTFLVTDAETVTVNVT