New model in OGS2.0 | DPOGS212181  |
---|---|
Genomic Position | scaffold3816:+ 12775-21103 |
See gene structure | |
CDS Length | 2604 |
Paired RNAseq reads   | 137 |
Single RNAseq reads   | 371 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA006624 (8e-24) |
Best Drosophila hit   | scab, isoform B (2e-10) |
Best Human hit | integrin alpha-9 precursor (1e-14) |
Best NR hit (blastp)   | hemocyte-specific integrin alpha subunit 1 [Manduca sexta] (3e-34) |
Best NR hit (blastx)   | hemocyte-specific integrin alpha subunit 1 [Manduca sexta] (1e-35) |
GeneOntology terms    | GO:0007155 cell adhesion GO:0008305 integrin complex GO:0016021 integral to membrane GO:0007229 integrin-mediated signaling pathway GO:0004872 receptor activity GO:0016020 membrane GO:0005515 protein binding GO:0007596 blood coagulation |
InterPro families    | IPR013517 FG-GAP IPR013519 Integrin alpha beta-propellor IPR000413 Integrin alpha chain IPR018184 Integrin alpha chain, C-terminal cytoplasmic region, conserved site |
Orthology group | MCL40091 |
Nucleotide sequence:
ATGGACAGAGTTGCATCAGATTTCAGAAAACCCCCAAGTGGAGGGAATGAACACCAATGC
CACCTTGGATCATCTTTGGCTGTTACTGACGCTTATTTTTTCACTTGTGCTCCTTTGTGT
TCAAAATATCTTCGATTATCAAACGGTTCTTTAGTGTTCGGAACTTTCGGCACATGTTTT
GTGTATGATGGTGAAAATGCCACGAGATACTGTGGTCTTCTCGAAAAGTACGAACATAGA
ATAAAACCTATAGCAGCTGTCGATAAATTTTATGGAGGTGTAGGATGGACAACATTTTCG
GATTACAACAATAAGATTATCCTAATAGCGAAGTCTATTCTAAAAGTAAGTAGTATTACT
TACATAGAAATGGACTCTCCTCTTAATCCAGTCGAAGAGGTGCCAATGCATAGCTCGTTA
AATATATTTTATTACAAAGGTCGAGCTTTTGCGAGTGGAAAATTTTTCAATGATAAAAGA
AATCTATATGCGTTCAGTATGAAAAAAGAAAAGCAAACAGGAGCGATTGCTTTCCTATAC
TACGACAAGAATCTTCCAAAGAAATTACAAGTGTTAAAAGATAACAGAAATCCTATTTTA
ATCTTAGATAACAAGTCTGTGTCAATGTTTGGTACTTCCTTGCATAGTGTGGACATAAAT
GGAGATGATTTCTCAGAGCTTATTGTTGGGGCTCCAGGCTTTTCTCAGATAGATGGTGGC
TATGAGAACGGTGCTATATATTTATATGAAGGTGGAGGGCCAATTATGGAGAGAAGAGAA
CCGACACATCGTATTAAAGGAACCAAAGATGGTGCTCGCTTCGGTTCATCCATAGCTTCC
ACTGATCTGGACGAAGATGGTTTACCAGAAATTTTCGTGAGTGCACCTTACGAAAATGGA
GGCGCTGGTGCTGTATACATTCTTTTAGGATACGAGGTCAAGAAATTACTTCGGAGTACC
GTTAAGGAAACCTCATTATCTAGCTTCATGTATTCACAAACATTACAAATATCCGAATTT
AAATCCTTCGGCTACAGTCTTCATGCATTTAACAGAAACGGTGTAAATTTTTTAAGTGTG
GGTGCGCCAGCCAGTGGTCAGATTGCAATATATCGTAGCATATCCTTTATCAACGCTACT
TTATCAATGTACCTGGCAGGAGATAAGGCAGTTCGGGAACAAGATGAAAATTTTATAGCC
GTCATAAAAATTCATCTGGGCTATCCCGAAATTATATTAGATACAGATATAAAATTATTC
CTGTGTACGGAGCTGTCTGGAGACGAAGCTAAGATTCAGAATAAAACAATTATCGAGTTC
AATTTATCAAAGGAAAAACCCACCGAACTCAAATTTAATATTGTCGTATTGTTGGCTAGG
AGAGGCCCGGGAGATTATAAGATCACTGCCAAAGTGAAAACGGATTTGGAAATGTCTAAA
GAACGTAATATTATACCAAAAGAATTCAATAAGTCATTAGTGATGATAACTCCGCAAAGT
AATAGAGAGGCTGTTTTGGAAGTGTCGCGACACTGTAAGGGCGATGAATGTGTTCCCCAA
CTGTCTACTTATTTGGAATGGTCTGGCAGGTCACCTGACACATACCTGTTAGGTTCGAGT
GTGAAAGAGACCATGAGGATAAGTATTTTGAACGAAGGCAGCAATACGTACGATTCTTGT
GCATGGATAAAAGTTACTGGAGCTCAGGTTGCAGTATTAGCATGTGTCCAAATCGATGAC
ACTTGGTATAAGTGTGATTTACGAATTGAAAGGGATGCAACGAGTACTATTGACATACAG
TTTGATTTGAGCCACCCCACTAACATGGAAGAAAGCCTTAACATTAAAGTCCTTTTATTC
AACCACTGTGCGTCCTTAAGTTCGAACGCAACTTCAGAAGAAAACAAGAAAATTACTTAC
AAATTAACTTCTGAAAACCTATACGTTGAAGGGTCGTCCATGGATCGAAACTTCACAGAG
AGTGAACTTAAAGATTTGGGAACAAATGATACTATAAGCGTTCACGAAACGTATAAGATA
ACGAATAATGCTTCGATATCCTGGAAGTCTGTGAAAGTTGTACTGTCATTACCGAATTTG
AATTTCATGCAGGATTACTTAATTGTGGATGAAACTAATTGTAAAACGAACAAAACGACT
GAAACATTGAAGATACAATGCTTTATTAATATTGATTCAAACTCGACTTATTTCATACGG
ACTATTGCTAGTTTATCTAAATCAAAAATGCGTTCACACTTTGCGAATAGACAGTTGATT
TTGAATTCCACTCTGATGCTTTTTATGTTACCAACCACAGAAAAAAAAACTAACGGATTT
TCAACGAGAATGTTTTTGCAAAAAGATTCTGAATTTTGGGAAAGCGAAACATTCATAATA
ACTGTATCTACAATAGCGGGCTTAATAATAGTGGTCATTATAGCTGCGATTCTATTTAAG
ATGGGCTTCTTTGTAAGAAAAGAGAAAAAGAAGTTAAACAATCTCAGAGACTCAATAAGG
AAAGGAACGTTTCGACGTCCTTCTGCACCAAATAGTAGTGAAGCAAGATGTTCTTCAGCA
GAAATACAGACAAAGGAAAATTAG
Protein sequence:
MDRVASDFRKPPSGGNEHQCHLGSSLAVTDAYFFTCAPLCSKYLRLSNGSLVFGTFGTCF
VYDGENATRYCGLLEKYEHRIKPIAAVDKFYGGVGWTTFSDYNNKIILIAKSILKVSSIT
YIEMDSPLNPVEEVPMHSSLNIFYYKGRAFASGKFFNDKRNLYAFSMKKEKQTGAIAFLY
YDKNLPKKLQVLKDNRNPILILDNKSVSMFGTSLHSVDINGDDFSELIVGAPGFSQIDGG
YENGAIYLYEGGGPIMERREPTHRIKGTKDGARFGSSIASTDLDEDGLPEIFVSAPYENG
GAGAVYILLGYEVKKLLRSTVKETSLSSFMYSQTLQISEFKSFGYSLHAFNRNGVNFLSV
GAPASGQIAIYRSISFINATLSMYLAGDKAVREQDENFIAVIKIHLGYPEIILDTDIKLF
LCTELSGDEAKIQNKTIIEFNLSKEKPTELKFNIVVLLARRGPGDYKITAKVKTDLEMSK
ERNIIPKEFNKSLVMITPQSNREAVLEVSRHCKGDECVPQLSTYLEWSGRSPDTYLLGSS
VKETMRISILNEGSNTYDSCAWIKVTGAQVAVLACVQIDDTWYKCDLRIERDATSTIDIQ
FDLSHPTNMEESLNIKVLLFNHCASLSSNATSEENKKITYKLTSENLYVEGSSMDRNFTE
SELKDLGTNDTISVHETYKITNNASISWKSVKVVLSLPNLNFMQDYLIVDETNCKTNKTT
ETLKIQCFINIDSNSTYFIRTIASLSKSKMRSHFANRQLILNSTLMLFMLPTTEKKTNGF
STRMFLQKDSEFWESETFIITVSTIAGLIIVVIIAAILFKMGFFVRKEKKKLNNLRDSIR
KGTFRRPSAPNSSEARCSSAEIQTKEN