| New model in OGS2.0 | DPOGS210307 |
|---|---|
| Genomic Position | scaffold954:- 11226-28279 |
| See gene structure | |
| CDS Length | 2466 |
| Paired RNAseq reads | 520 |
| Single RNAseq reads | 1800 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA014000 (0.0) |
| Best Drosophila hit | CG11136 (5e-69) |
| Best Human hit | leucine-rich repeats and immunoglobulin-like domains protein 3 isoform 1 (4e-19) |
| Best NR hit (blastp) | cys-loop ligand-gated ion channel subunit-like protein [Tribolium castaneum] (4e-110) |
| Best NR hit (blastx) | cys-loop ligand-gated ion channel subunit-like protein [Tribolium castaneum] (6e-100) |
| GeneOntology terms | GO:0016021 integral to membrane GO:0030334 regulation of cell migration GO:0005886 plasma membrane GO:0005927 muscle tendon junction GO:0005515 protein binding GO:0043234 protein complex |
| InterPro families | IPR001916 Glycoside hydrolase, family 22 IPR001611 Leucine-rich repeat IPR023346 Lysozyme-like domain IPR003591 Leucine-rich repeat, typical subtype IPR000483 Cysteine-rich flanking region, C-terminal domain IPR019799 Glycoside hydrolase, family 22, conserved site |
| Orthology group | MCL16219 |
Nucleotide sequence:
ATGTGGCTAACCGGGGCGCTGTCAATACTGTGTCTTTCAAGCGTGCTGTCTGATTGGCAT
TGCCCAGAAATAAGCTCTCGTCCTTTAGCTGAATGCTCCTGCGATTTACCTCATACTTTA
AGATGCACTGGCGACCATAATGCTTTACAGATAATTGGTCGTCACTTAAGAGAGCAGAGA
GCTAGAAACAAAAATACAGCTGTATCTTTGCTTGATTGTGCTTTACGAGGCTTGTCTTCT
TTGACATCCGCGTCGGTATCTGAACTGGCGGGGGTTGGCTTACACGGCCTGGTTATATCA
TCTGGAGATATTAAACGAGTGCAGTCTGGAGCTTTCAATAGCATATCATCAACTTTACTA
GCCTTGGGTTTACCTAACAATCAATTGCCGTTAGTACCGACAGAAGCAATAGTACGTTTG
GTACATCTAGATCGTTTGGATCTTTCAAATAATAAAATTCACACTTTGGATGCGAATTCG
TTCAAGGGAGTACATAATCTTACTTACCTTGACATAAGTGATAACCAGTTGACAAGCATT
GCTGATGGAGCTTTTCAACCTTTGATTAAACTGAATGTGTTGAGGTTAAGGGGTAATCTA
CTTAAAGTTTCCGCTTTGACAGCTTTAAAGGAAGCGAACATGTTAAAAGAACTTGATGTA
TCCAGTAATGCCTTAGAAGGACCTGTAGGTCCGTCGACAGTGCCTTCACTAAGCTATTTG
GAGACTCTTCATTTATCAGATAATACTTTTGCGAGTATACGACGTGGGGCTCTTGCAGGT
CTTACAAATTTGACTTTATTGAATCTACATAACAACCAAATAGATGTGCTTGAAGATTAC
GCGTTTAAACATTTAACTAACTTGTCTCATTTGGATTTGTCTCATAATGAAATTGTAGCT
GTCTCCGGTGCTTCATTAGCTCAACTAGCAAATTTGGCGTATTTGGATTTATCTCACAAT
TTCCTCCGATCATTGTCAGCTGACCCACTCAAAGCTCTCAATCGTTTAACAAATCTTCTT
CTTCATGACAACGACATATCTATGATCGAAGATGGTGCTCTAACACTCCACAAAGACCTG
CGAAGATTCACTATCGAAGATAATCCACTTAATTGCGATTGCTTAATGGCCGGCTTTGCG
AGGTGGTTGCGGGAGGCAAAAAATCTGCCTCAATCTGATAAATCAGCCGCAGTTTGTGCC
ACGCCACCTCATTTGGAAGGAGCATTAATTTCCCGACTATCTAAAAACAAGCTATGTGAC
GATGACCACGTTGAGAATCAAAAAGCTATAGATCAAGCGAACTATGATTATAACAAAGTA
GATGATAATATTATAGATGAAGATAAAATTGATGATTTATTGTATGGTGAAAAAATTGAT
GGATTGGATGATGATGCTTATGACGAGGAAATGGAAGTTCCCGGGGAAGAAGATCTGCCG
ATATCTAAGTCAACGGTGCGTTTGATGGATGCGTGGTATGATGATGAAGAAGTACATTTG
TCCTGGACAATAGAACCCCTCTCGACTCTTCGATATCGGTGCACAGGTGTGACAGCTTCC
AAGGCTGGTGGTCTTCCCAAACATATCGCCTGCCATAGAGCACCACCAGCCAATATCGTG
TTAAGAGGTTTTAAAATTGATCCCTTAGAAAAGTATACTTTTTGTGTGGCTCTGGAAGAA
ATGGATACCAAAGATATGCCCATAGCCTTAGTTTTGGGCTGTGGGACACCATCTCTGGTT
AGACAACGAGTAGAATATGTCACAGTACGCTCTGAACCCATTACTGTGCCCATATTAGAA
CCTATAAGAGTCTCCGAAGTGCGATCTAACATCACCAGCGATGGATTGCTAACTGTCCTA
ATATCCGTTTTGGGAATACCGCCTCCAAAGCAATACGTTTTACCAAGATCCCAAAGAGTG
TCAATGCCCGACAGATATCTACACAATTGCTATGTAATTCTAGCAGTTCTGGATAGAGGG
TCCTTAGTGGCCCAAAAAGATACGCCGTGTCAGGATACCTTGGAAGTAACAATGGAAGGC
TTTGTAAGAGGTCCATATGAAGTTTTCACACGGTGCCAATTGACGCGGGAGCTATTGAAA
AATCATTTCCATCAAAAGACTTTCCTTAGTAACTGGGTATGTTTGATAGAGCAAGAAAGT
GACAGAAACACATCAGCTCATATTGTCAAAACACCAAGAAAGCAATATTACGGTCTGTTT
CAGATAGGGAGCGAATGGTGTAAGGAGGGTAAAAAAGGTGGCAAATGTGACATCGCTTGC
GAATCTCTATTAGATGATGATATAAGAGATGACTGCGCGTGCGCATACAAAATATTTGAA
AACGAGGGATTCAAGTATTGGACTAAATGGGAAACTCGGTGTAAGGGGGAAAGATTACCA
GACATTGAAAAATTGGCAACATCCTCCGAGGGCTTCTCCAGAACGAATGAAAAGAACATT
AAATAG
Protein sequence:
MWLTGALSILCLSSVLSDWHCPEISSRPLAECSCDLPHTLRCTGDHNALQIIGRHLREQR
ARNKNTAVSLLDCALRGLSSLTSASVSELAGVGLHGLVISSGDIKRVQSGAFNSISSTLL
ALGLPNNQLPLVPTEAIVRLVHLDRLDLSNNKIHTLDANSFKGVHNLTYLDISDNQLTSI
ADGAFQPLIKLNVLRLRGNLLKVSALTALKEANMLKELDVSSNALEGPVGPSTVPSLSYL
ETLHLSDNTFASIRRGALAGLTNLTLLNLHNNQIDVLEDYAFKHLTNLSHLDLSHNEIVA
VSGASLAQLANLAYLDLSHNFLRSLSADPLKALNRLTNLLLHDNDISMIEDGALTLHKDL
RRFTIEDNPLNCDCLMAGFARWLREAKNLPQSDKSAAVCATPPHLEGALISRLSKNKLCD
DDHVENQKAIDQANYDYNKVDDNIIDEDKIDDLLYGEKIDGLDDDAYDEEMEVPGEEDLP
ISKSTVRLMDAWYDDEEVHLSWTIEPLSTLRYRCTGVTASKAGGLPKHIACHRAPPANIV
LRGFKIDPLEKYTFCVALEEMDTKDMPIALVLGCGTPSLVRQRVEYVTVRSEPITVPILE
PIRVSEVRSNITSDGLLTVLISVLGIPPPKQYVLPRSQRVSMPDRYLHNCYVILAVLDRG
SLVAQKDTPCQDTLEVTMEGFVRGPYEVFTRCQLTRELLKNHFHQKTFLSNWVCLIEQES
DRNTSAHIVKTPRKQYYGLFQIGSEWCKEGKKGGKCDIACESLLDDDIRDDCACAYKIFE
NEGFKYWTKWETRCKGERLPDIEKLATSSEGFSRTNEKNIK