New model in OGS2.0 | DPOGS200298  |
---|---|
Genomic Position | scaffold2352:- 11218-12964 |
See gene structure | |
CDS Length | 1521 |
Paired RNAseq reads   | 9 |
Single RNAseq reads   | 32 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010461 (2e-99) |
Best Drosophila hit   | CG9512 (1e-60) |
Best Human hit | choline dehydrogenase, mitochondrial precursor (2e-43) |
Best NR hit (blastp)   | putative ecdysone oxidase [Heliconius melpomene] (7e-144) |
Best NR hit (blastx)   | putative ecdysone oxidase [Heliconius melpomene] (1e-138) |
GeneOntology terms    | GO:0008812 choline dehydrogenase activity GO:0006066 alcohol metabolic process GO:0050660 FAD binding |
InterPro families    | IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal IPR012132 Glucose-methanol-choline oxidoreductase |
Orthology group | MCL25373 |
Nucleotide sequence:
ATGTATCCAGGGCTGTCATCGTATACATATCACTCTCGTTTAGATTGGAATATAACTTCA
CAATACGATGGCACAACGGCCCAATGCAGAAAAGACAAAGTCATACCTCAGTTTAGTGGT
CGCGTGCTTGGAGGAAGTAGCTCCATCAATTGCATGTATTACGTGCGAGGCAATCCCTAC
GATTACAATCGCTGGGCGCAGTTGGTCAATGATGAAACTTGGAAATGGGAAAATGTCCTC
CCTTACTTCATTAAAAGTGAAAGGATGCTTGACAAGGATGTCTTGAAATCTGCTACTGGG
AAGCTTCATGGAAGACACGGTGAAATTGGCATCACAAGAAGTATAGATAACAACACAAGA
AGATTTCTACGTTCCTTAAAGGAAGACGGTATCCCCGTTACTATGGATTACAATGCCAAT
AAAACGTTAGGCTATAGCGATGTATTTTTTACGATTGCAGATGGCTATCGTCAAAGTACA
GGATACAGATTCTTAGGGCTCGCTAGAAATAGACCTAACTTATATATATTAAAAAATACC
GTAGCAACAAAAATATTATTCAACGACGATAAAAGAGCTTACGCTGTAGAGGTAGTTACA
GAGAATAAAATAAAAAAAGTGACTCTAAAAGCAACTAAAGAAATAATTGTATCAGCAGGC
GCCTTGAAATCTCCACAATTGTTGATGCTGTCAGGTATTGGTCCTAAAGATCATTTACGG
ACGTTAAATATCGATGTTATTGCTAACTTACCGGTTGGAAAAAATCTCCAAGATCATCTT
GCCATACCAATATTACATACATTGCAAAAAAATAAAAAAAAATCTTTTCCCAAACCTTTC
AACCCACATGTTTATCCGTACTCAAACATAGTCGGCTTCGTTGCTCTAAACAAATCACAG
TCATACCCGGATTATGAATCAACAATTAATATTATAGATGATGGAGCTAAGGACTTACTT
CAACTTTACTCTTTTGTGTATCAGTATTCTGATAATGTAAGTGATAGTATTTATAATTAT
GCTAAAGAAAGCACGGTTATTGAGACATTAATAACAGACCTTCATCCGAAATCTCGCGGA
GAAATTTTGTTACGTAGTGTCAATCCATTTGATCATCCCTTAGTTTACACAGGTTATTTA
TCGGAAGAAGAAGATCTCGATAACACAATAAGATACATCGAAGACTATCTCCGCCTAACA
CACACTTCTTACTTTAAGAAAAATAATGCGCAAATGATAAACATAGTTGGTAATATGTGT
AAGGGTTTCAAATTTGGCAGTAAAGATTACTGGACGTGCTATATACAGTGTACATTGAAT
AACATGACCCATTACTCAGGGACATGTGCGCTTGGGTCCGTTGTAGACAGTCGATTACTA
GTCCGAGGCGTCAAAGGTTTGAGAGTCACCGACACTAGTATAATGCCATACATAGTTAGT
GGAAATACAAATGCCCCTACCATGATGCTTGGTGAAAAGGTCTCTGATTTCATTAAAGAA
GTGCATGGTGCATTAAAATAA
Protein sequence:
MYPGLSSYTYHSRLDWNITSQYDGTTAQCRKDKVIPQFSGRVLGGSSSINCMYYVRGNPY
DYNRWAQLVNDETWKWENVLPYFIKSERMLDKDVLKSATGKLHGRHGEIGITRSIDNNTR
RFLRSLKEDGIPVTMDYNANKTLGYSDVFFTIADGYRQSTGYRFLGLARNRPNLYILKNT
VATKILFNDDKRAYAVEVVTENKIKKVTLKATKEIIVSAGALKSPQLLMLSGIGPKDHLR
TLNIDVIANLPVGKNLQDHLAIPILHTLQKNKKKSFPKPFNPHVYPYSNIVGFVALNKSQ
SYPDYESTINIIDDGAKDLLQLYSFVYQYSDNVSDSIYNYAKESTVIETLITDLHPKSRG
EILLRSVNPFDHPLVYTGYLSEEEDLDNTIRYIEDYLRLTHTSYFKKNNAQMINIVGNMC
KGFKFGSKDYWTCYIQCTLNNMTHYSGTCALGSVVDSRLLVRGVKGLRVTDTSIMPYIVS
GNTNAPTMMLGEKVSDFIKEVHGALK