New model in OGS2.0 | DPOGS211365  |
---|---|
Genomic Position | scaffold429:+ 34876-37871 |
See gene structure | |
CDS Length | 1611 |
Paired RNAseq reads   | 812 |
Single RNAseq reads   | 2224 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008459 (2e-11) |
Best Drosophila hit   | crooked neck (2e-138) |
Best Human hit | crooked neck-like protein 1 (2e-133) |
Best NR hit (blastp)   | PREDICTED: similar to crooked neck CG3193-PA [Apis mellifera] (2e-169) |
Best NR hit (blastx)   | PREDICTED: similar to crooked neck CG3193-PA [Apis mellifera] (2e-164) |
GeneOntology terms    | GO:0007443 Malpighian tubule morphogenesis GO:0048663 neuron fate commitment GO:0007405 neuroblast proliferation GO:0007417 central nervous system development GO:0005634 nucleus GO:0007422 peripheral nervous system development GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0016607 nuclear speck GO:0005488 binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0007438 oenocyte development GO:0008347 glial cell migration GO:0008366 axon ensheathment GO:0071013 catalytic step 2 spliceosome GO:0071011 precatalytic spliceosome |
InterPro families    | IPR003107 RNA-processing protein, HAT helix IPR008847 Suppressor of forked IPR011990 Tetratricopeptide-like helical IPR013026 Tetratricopeptide repeat-containing |
Orthology group | MCL11742 |
Nucleotide sequence:
ATGCCGAAGGTAGCAAAAGTAAAAAACAAAGCTCCTGCAGAAATACAGATCACTGCCGAA
CAGCTCCTACGAGAAGCCAAAGAACGTGATTTAGAAATATTACCACCTCCACCAAAACAA
AAGATATCTGATCCAGAGGAATTAAGAGAATATCAACATCGTAAAAGAAAAGCGTTTGAG
GATAACATCAGAAAGAACAGACTTGTTATTGGTAATTGGCTCAAATATGCACAATGGGAG
GAGTCACAGAAACAAGTACAAAGAGCTCGGTCTATCTATGAAAGGGCACTGGATGTGGAT
CACCGAAATGTCACCCTTTGGTTGAAGTACACTGAAATGGAAATGCGTAACAGACAAGTG
AACCATGCTCGTAACCTGTGGGACAGAGCAGTCACCATTTTGCCGAGGGTTTCACAGTTT
TGGTATAAATATACGTATATGGAAGAAATGTTAGAAAATGTAGCTGGAGCAAGACAGGTT
TTTGAACGATGGATGGAATGGCAACCGGATGAGCAAGCCTGGCAAACTTATATTAATTTT
GAATTAAGATACAAAGAACTGGATAGGGCCAGACAAATATATGAAAGATTTGTAATGGTC
CATCCAGATGTTAAACATTGGATCAAATATGCAAAATTTGAGGAAAACCATGGTTTCATA
AATAGTGCAAGGAAAATTTTTGAAAGAGCTGTTGAATTTTTTGGTGATGAAGAATTAGAT
GAAAGACTTTTTATAGCTTTTGCTAAATTTGAAGAGAATCAGAAGGAACATGACAGGGCA
AGGGTAATTTATAAATATGCATTGGACCATATTCCTAAAGACAGAAACAAGGAGCTGTAT
AAAGCTTACACAATACATGAAAAAAAGTATGGTGATAGATCTGGTATTGAAGATGTAATT
AAATTTCTAGAATACGGACCAGAGAACTGTGTAACTTGGATAAAATTTGCAGAACTTGAA
ACTCTGTTAGGGGATATTGATAGAGCAAGGGCAATATATGAGATAGCAGTCGGACAGCCC
AGATTAGATATGCCTGAGTTGTTATGGAAGAGCTACATAGATTTTGAAGTTGCCCAAAGT
GAAACCGACAAAGCCAGGCAGCTGTACGAAAGATTATTAGAAAGAACGGTCCATGTTAAG
GTTTGGTTATCATACGCAAAATTCGAGTTGAATGCTGAAAATCCCGATAACATCAACACA
GAATTAGCGCGCAGAGTCTATGAACGCGCTAATGAAAGTCTGAAAAGTGCGGGGGAGAAA
GAATCTAGAGTATTGCTTTTAGAAGCTTGGAAGGAGTTTGAAACCGAAATTGATGACAAG
GAAAAACTCGAGAAGGTTCTAGCGAAGATGCCAAGGAGGGTTAAAAAGAGACAGAAGATT
ATAAGTGAAGCTGGCATCGAAGAGGGGTGGGAAGAAGTATTTGATTACATATTCCCAGAA
GACGAAATGGTTAGACCGAATCTTAAATTGCTTGCTGCTGCCAAAAATTGGCGTAAAAAA
CAAGTTGTACCAGATAATTCAGAAACTGAAAGTAATGATGAGCAAGACAAGAATTCCGGA
GACACACAAGAAGAGGATCCAAGCAAAGAAAGTGCTAATGAAGAATCATGA
Protein sequence:
MPKVAKVKNKAPAEIQITAEQLLREAKERDLEILPPPPKQKISDPEELREYQHRKRKAFE
DNIRKNRLVIGNWLKYAQWEESQKQVQRARSIYERALDVDHRNVTLWLKYTEMEMRNRQV
NHARNLWDRAVTILPRVSQFWYKYTYMEEMLENVAGARQVFERWMEWQPDEQAWQTYINF
ELRYKELDRARQIYERFVMVHPDVKHWIKYAKFEENHGFINSARKIFERAVEFFGDEELD
ERLFIAFAKFEENQKEHDRARVIYKYALDHIPKDRNKELYKAYTIHEKKYGDRSGIEDVI
KFLEYGPENCVTWIKFAELETLLGDIDRARAIYEIAVGQPRLDMPELLWKSYIDFEVAQS
ETDKARQLYERLLERTVHVKVWLSYAKFELNAENPDNINTELARRVYERANESLKSAGEK
ESRVLLLEAWKEFETEIDDKEKLEKVLAKMPRRVKKRQKIISEAGIEEGWEEVFDYIFPE
DEMVRPNLKLLAAAKNWRKKQVVPDNSETESNDEQDKNSGDTQEEDPSKESANEES