| New model in OGS2.0 | DPOGS210296 |
|---|---|
| Genomic Position | scaffold9796:+ 322-4176 |
| See gene structure | |
| CDS Length | 801 |
| Paired RNAseq reads | 450 |
| Single RNAseq reads | 1149 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004227 (2e-101) |
| Best Drosophila hit | flap endonuclease 1 (3e-85) |
| Best Human hit | flap endonuclease 1 (1e-75) |
| Best NR hit (blastp) | flap endonuclease-1 [Aedes aegypti] (3e-111) |
| Best NR hit (blastx) | PREDICTED: similar to flap endonuclease-1 [Tribolium castaneum] (1e-100) |
| GeneOntology terms | GO:0005634 nucleus GO:0048256 flap endonuclease activity GO:0006281 DNA repair GO:0004519 endonuclease activity GO:0003677 DNA binding |
| InterPro families | IPR019974 XPG conserved site IPR006084 DNA repair protein (XPGC)/yeast Rad IPR006086 XPG/RAD2 endonuclease IPR020045 5'-3' exonuclease, C-terminal subdomain IPR008918 Helix-hairpin-helix motif, class 2 |
| Orthology group | ND |
Nucleotide sequence:
ATGTATAACATTCCAGGTGACACGGCATCTATAGACAAGTTCAACCGTCGGTTGGTGAAG
GTGACTCAGCAACACGGCGCCGAAGCTCGGCAGTTGTTGAAGCTTATGGGCATACCCGTG
GTGGAGGCTCCGTGTGAAGCTGAGGCACAATGCGCTGAATTAGTCAAAGGTGGTAAGGTG
TATGCTGTAGCCACTGAGGATATGGATGCTTTGACCTTCGGAGCGAACGTGCTGTTGAGG
CACCTCACCTTCTCCGAGGCGAGGAAGATGCCAGTACAGGAGTTCCACCTGGACCAGGTG
CTGAGAGGATTGGAATTGGAACAGACAGAGTTCATTGACCTCTGCATTCTGTTGGGTTGT
GATTACTGCGGCTCCATCAAAGGGATCGGACCGAAACGGGCCATCGAACTCATCAAGCAA
CACCGCAGTATAGAACAGGTCCTTCACAATATCGACACAAAGAAGTACAGTCCGCCGGAG
AATTGGGAATACGAGAACGCTCGGAGACTGTTCCAGCAACCAGAAGTTACCGAGGCGAAG
GATGTCGAGTTAAAATGGTCGGATCCTGACGAGGAAGGTCTCGTGAAGTTCCTCTGTGGA
GACAAACAGTTCAACGAGGAGCGCGTCAGAAACGGGGCCAAGAAACTCATGAAGGCGCGC
ACCGGAACCACGCAGGGCAGGCTGGATGGATTCTTCAAGGTGTTATCAACAACACCAAAC
CCAAAAAGGAAAGCGGAGGAAGATAAAAAGAGTGCCAACAAGAAAGTTAAAACAGCTGGA
AGGGGGCGGAAACCGAAATAA
Protein sequence:
MYNIPGDTASIDKFNRRLVKVTQQHGAEARQLLKLMGIPVVEAPCEAEAQCAELVKGGKV
YAVATEDMDALTFGANVLLRHLTFSEARKMPVQEFHLDQVLRGLELEQTEFIDLCILLGC
DYCGSIKGIGPKRAIELIKQHRSIEQVLHNIDTKKYSPPENWEYENARRLFQQPEVTEAK
DVELKWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKVLSTTPN
PKRKAEEDKKSANKKVKTAGRGRKPK