| New model in OGS2.0 | DPOGS209976 |
|---|---|
| Genomic Position | scaffold128:+ 169351-172325 |
| See gene structure | |
| CDS Length | 2475 |
| Paired RNAseq reads | 1050 |
| Single RNAseq reads | 2652 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011264 (8e-42) |
| Best Drosophila hit | CG5800 (1e-172) |
| Best Human hit | probable ATP-dependent RNA helicase DDX10 (7e-162) |
| Best NR hit (blastp) | PREDICTED: similar to CG5800 CG5800-PA [Acyrthosiphon pisum] (0.0) |
| Best NR hit (blastx) | PREDICTED: hypothetical protein [Nasonia vitripennis] (0.0) |
| GeneOntology terms | GO:0003724 RNA helicase activity GO:0008026 ATP-dependent helicase activity GO:0003676 nucleic acid binding GO:0005524 ATP binding |
| InterPro families | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site |
| Orthology group | MCL13976 |
Nucleotide sequence:
ATGAAGAAAGACGAGAAAACTGGAAATGTGTCTGATAAAAAGAAAAAACATCATGTTTTT
AAACATAAAAAGAAAAAACGAGCAGAAGAAGATTCGGCCATTCAATATTTACAGTCGCAG
TATAGCACGATTAATCCAGAAGAAATCAAAACATTCAAGGATTTACCGTTGTCGCAAAAA
ACATTGAAAGGTTTAAAAGACAACAACTATATCACTCCAACAGATATACAGAGACAAGCA
ATAAGCTATGCTTTGCAAGGAAAGGACATTTTAGGCGCCGCAAAGACAGGCTCAGGAAAA
ACATTAGCTTTTCTTGTACCTATATTAGAACTGCTGTTTTGTAAGAAATGGACTAGGTTG
GATGGGGTTGGAGCTTTAGTCATATCTCCGACAAGAGAACTGGCTTATCAAATTTATGAA
ACACTCAGAAAAGTAGGCCACTTACATGATTTCTCAGCTGGCCTGATTATCGGAGGACAG
AATCTAAAATTTGAAAGAAAGAGAATGGATCAAATCAATATTCTTATATGCACACCAGGT
CGACTTCTGCAACATATGGATGAGAACCCATTGTTTGACTGCAGCCAGCTGCAAATATTA
GTTTTGGACGAAGCCGACCGTTGTCTCGATATGGGTTTTCAAACCACAATGAATGCTATT
ATTGAAAATTTGCCTCCAAAACGACAAACCTTATTGTTTTCAGCCACACAGACAAAGTCT
GTCAAAGACTTGGCTCGATTAAGTCTATCATTTCCAACATATGTTGCTCCTCACGAGCAG
GCCAATACTGTTACTCCTGAATCTCTACAGCAAAGTTATATTGTATGTGAGATTGATGAA
AAGCTCGGCATCTTGTGGTCTTTTATAAGGAACCATTTAAAACAAAAAGTTTTAGTATTC
ATGGCCACATGCAAGCAGGTCAAGTACACTTACGATTTATTCTGCAAACTAAGGCCAGGT
GTTAGTCTACTGGCTCTGTATGGGACATTACATCAAGAAAAAAGAGAGAAGATATATGAA
GAATTTTGTAGGAAATCCAATGTAGTACTCTTTGCAACCGATCTGGCTTCAAGAGGATTA
GACTTCCCTCGAGTCAACTGGGTGTTACAGTTTGATTGCCCTGAAAATGTAGATACATAC
ATACACAGAGCTGGTCGCACTGCGAGAGGAGTGTTTGGCAAAGGGGAGGGTCTTTTAATG
TTATTGCCTCATGAAGAGAAGATTGTTGACGATCTAACAAAAAGTAAAATTCCAATCAAA
AAGATCTCTGTTGATCCATCTAAATTACAATCCCCTCAGAGAAAGATAGAAAGTCTCCTG
TCTGATAACACAGAATTAAAGCAAACTGCACAAAGAGCATTTGTCAGCTATGTGAAATCT
ATATTTCTTATGAAAAATAAAGAGATATTTAACATTCAACTTCTTGACACTGACGCTTAT
GCAAGATCACTGGGTCTAATAAATCCACCTAGAATAAAGTTCATGCACAAATTCAACAAA
AGTTCTACAGCCTCAAATGGGACTGAGAGCAAAACTACTGACATCATTGAAAAACTTGAA
GCAAAGTCAGTTGAAAATGAAGAGTCCGATCGAACTGACTCTGAGAAAGAAGATGAACTG
AAACCCATAAGCAAAGCTAAAATTAAAAAGGAACTTCCCAAATTCAACTTTCATGATGAT
AATGTTGACAGCGATGAAGAGAGCTTCTTACAGGTGAAAAAGAAAAATGTCGATGTTGAC
ATCCCCACACCCCAAACAGAAGAAACGACGACATCAAAGAAGAAAACAAAGCCTCTGACT
AAAGCGGCCGTCGCCAAGAAAATACTTAAGAAGAAAATCAAAGTTAACACAACAGTCAAG
TTCACAGAGGACGGCGAAGCAATAGACGACGACAAGAAAGATGTCAAGTCAGAACTGGCT
AAGCAGTTTGTTAATGAAAATGTTGGCGGTATAGATATTGAGAAAGCAAAAGAAGTACTC
CGAGAGGAAGACAAGTATGACAAACAGAGATTCAGAGAAAAAGTTAAAGCCAAGCACAAA
GAACAGAAAAGAAAACTTAAGAATAAGAAAAAAGAAGAAGAGGAAGGAGAAAAGGATGAG
TTTGGTTCGAGTTCAGAGTCTGATGGACCAGATCTATCATGGCTGCCCGACCCAGACAAA
GTCTATGATAGAAATAATGAGCAACAGCCTGAGTCTGATGAACATGCAGAGGGTGATGAT
GATGATGATGATGGTGGTGATGATGATGATGATCATGATAATGATGATGATGATGTGGAT
GTGGGTGATGACAGTGAACTATCTGACTCAGAACAAAAATACCACAGGCCAACAAAGAGG
AAACTAGTGGAAAGTAAAGGCATACCACAAGAGAGTATAAACCCTCGCAAAATCAAAAAA
ATTGAAGACGTATCGGCTAGTCTTTCAGTACAAGAAGCGGAAGCCCTCGCCATGCAGTTG
CTGAAGTCCAAATGA
Protein sequence:
MKKDEKTGNVSDKKKKHHVFKHKKKKRAEEDSAIQYLQSQYSTINPEEIKTFKDLPLSQK
TLKGLKDNNYITPTDIQRQAISYALQGKDILGAAKTGSGKTLAFLVPILELLFCKKWTRL
DGVGALVISPTRELAYQIYETLRKVGHLHDFSAGLIIGGQNLKFERKRMDQINILICTPG
RLLQHMDENPLFDCSQLQILVLDEADRCLDMGFQTTMNAIIENLPPKRQTLLFSATQTKS
VKDLARLSLSFPTYVAPHEQANTVTPESLQQSYIVCEIDEKLGILWSFIRNHLKQKVLVF
MATCKQVKYTYDLFCKLRPGVSLLALYGTLHQEKREKIYEEFCRKSNVVLFATDLASRGL
DFPRVNWVLQFDCPENVDTYIHRAGRTARGVFGKGEGLLMLLPHEEKIVDDLTKSKIPIK
KISVDPSKLQSPQRKIESLLSDNTELKQTAQRAFVSYVKSIFLMKNKEIFNIQLLDTDAY
ARSLGLINPPRIKFMHKFNKSSTASNGTESKTTDIIEKLEAKSVENEESDRTDSEKEDEL
KPISKAKIKKELPKFNFHDDNVDSDEESFLQVKKKNVDVDIPTPQTEETTTSKKKTKPLT
KAAVAKKILKKKIKVNTTVKFTEDGEAIDDDKKDVKSELAKQFVNENVGGIDIEKAKEVL
REEDKYDKQRFREKVKAKHKEQKRKLKNKKKEEEEGEKDEFGSSSESDGPDLSWLPDPDK
VYDRNNEQQPESDEHAEGDDDDDDGGDDDDDHDNDDDDVDVGDDSELSDSEQKYHRPTKR
KLVESKGIPQESINPRKIKKIEDVSASLSVQEAEALAMQLLKSK