| New model in OGS2.0 | DPOGS213613 |
|---|---|
| Genomic Position | scaffold271:- 115366-127530 |
| See gene structure | |
| CDS Length | 3744 |
| Paired RNAseq reads | 1715 |
| Single RNAseq reads | 4604 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011675 (5e-15) |
| Best Drosophila hit | nuclear pore protein 160 (3e-42) |
| Best Human hit | nuclear pore complex protein Nup160 (1e-33) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC011717 [Tribolium castaneum] (1e-107) |
| Best NR hit (blastx) | PREDICTED: similar to Nuclear pore complex protein Nup160 homolog [Apis mellifera] (1e-57) |
| GeneOntology terms | GO:0008150 biological_process GO:0005575 cellular_component |
| InterPro families | IPR021717 Nucleoporin Nup120/160 |
| Orthology group | MCL12184 |
Nucleotide sequence:
ATGGAGTTTGTCGATGCAATACCGGTAACGTTCAAAGAAATAACTCCAAATCATAATATT
CCCGAAAAATGGAAAGAAGTTGTATTGAATACAGGAGGCACTCACAGTACATTACAAGAT
ATAAAATTACCTCACAAAGCTGGCGGCTACTGGTACAAAGATTCGAAGAGAGCTAACACT
AGGAACAGATTCATTTACTGGCAAACTACATCAGATTCTATTGAATTGTCAGAAGCTTCT
TTAGATGTTAACTTGTCTGGGGCTAATTTGAGATGTAAAGTTGCAGCTGGGACTCCACCG
TTAAATAATTTAGAGTTTTATGAGAAGACGTCCTCACAACAGTTAGTTATTTTAGCTGCT
ACTGTCTCTTCTGTACATAGATTAGTCTTTCCTCATCCTGATCTTCTGGATAGAAAGTCT
ACATTTGGGTCTATGTGCAGCATCTGCCCTTCCATATTTCATGACACTAGCTCACTCAAC
AATCCAAACAATTACTACATACTTAATCAATATTCTAACACAAATACAGGTGTGGCACAT
TCCTGTGCTTCCCTGCTGAGGGACAGCGGAGAGGCAGTTTTTGCTTTGGCATTTGGATAT
GGCGGTGAAGGAGGCCTTTTATTAGTAAAGTTGCCGCTGGCCGGCTCAGCCGTTACATTA
TCATTAAAACGAGAATCAACCGTGCCAAGATTCTTATCTGGCATCACGGGTGCTTTAAGG
GGAAAAAGTGATGGAGTTGACACATATGGTGTGGTTCTGACAAACGGCTTGGTTGTTGCT
ATATGTGGAGATAACTGTCTCAGAGTGTGGTCGCTAGATGATGGTGGTGTACCAACAGCT
GTTTCAACCTCTTTATCCCAGACATTGGTTAAACCAAAGCCTCCTCCTCACGGTCACATG
CTGCAATATACAACAGGCTTAGATGGAAGTATAATATTGGTAGCTTATTTATCATTCCCA
AATGAATGTGAATTTGTAGTTATGAAGATGCATGATGGGGGTGTGGGTGCTGCTAGGTTC
ACACAAATGTGTCACATCTTTGGACCACAGTTGGATCTTCTTGATTATACAATCGGTTAC
GGAGATGGTAACCACGTCATTTGGGCGTTATGGACTCAGCCCGATGGTGACGCTGTTGTT
ACAACTACTGGCATCGGTCCGGAGGCGCAGTGGCGCGCTGTCGCTGGTCGCGAGCTTCCG
CCCTCTCTTCCTCAGTTGTCTTCACTCAACATGTACCGGGATCGGCTACTCGCGCCGGGA
CTCTTCCCTCCGGCCGTCATTCGTAAGGCATTGGTTATATACCGTCGTCAGTGGGGTGGT
GAGGGGGGAGAGGGGGATGTTGATTTGGGGGAGGCGTGTGTGTCGGCGGTACAGGCAAGA
CTACGAACACTCACCGCACGACACCAGCCAGCCGACCATTCACACCTCATGCATAAATGC
TGGACAGATTTATACAGCTGGTGCATGCAATACATGGAGGGGCTGCAGAAACCGCTCGGC
CTCATGGTGTCTAAACATTATAAGGAGTCAGAGTCGGGCTGGTGGTGTGGCGTAGTGAGG
CGGGCGGGCGTCTCCCTCGTTAGACAGTTGGAGCCCTACGAGCGAGTCATGTTGTCCCCG
GAAGATACATTGCCTGATACTGTCTTCAGAGGTAGTGGGGAGGTGGGTCCGGTGTCGTCG
GAGGCGATGCGCGTGGTGGTTGCGGGGGCGAGGTGGGAGCGTGGCGCCACTCCGGCGGGG
GCCGCAGAGCTGGAGAGACGTCTCTTCGCGTGTGCTGCTCCACAGCACCGCCTGCTGCCG
CGTCTGCTACATCTGCTGCTGCAACCCCCGGAGGACGCCGCCACGCCCACGCTGTCCCCG
GAACAAATCGATGAAATCTCAGCCATCTTGGAACCGATCAACGATTTGCAGAATGCGGTA
CTCAATTTAAACGAAGCCCTGAGACTGGACGTTCCGGAGATAGATTCTAGTGACAATGAT
GATACCGCTGAGTACGATAATCTCTTTGCGAGCGATCTCGGAGTAGCTATAGTCACTGAA
GCTATACGACAAATGGCTGAGATGAGATGTCGCGTTGTCCGCGGCGCCCTCGCAGCTCTC
GGCGCGGCTCGCGGCGCCGGCGGGGTCCCGGGCGCTGGACACTGCGCCAACGGGTTCATC
GGAGCTGTTCCGATTGAAGCTCACCGCTCTCGGTGGGGAGAGTGCAGAGGGTTGCGGGGG
TGGGGAGGGGGTGGAGCGCAGGGGGCGGTGGCGGCCTACACGGCGGCGGCCGGGGGGCGC
CGCGCCAGGAGAAAGTTGGCGGCCGCGCGGGCACCGCTACACTGGCACCAAGCACTGCCG
CTCATGGCCTATCATCTCGCATATCAACTCTGGGCTGTGAGTGGTGGCTTCGAATTTGGT
TGGTGGCTGGCGTCCATCAACCAGCCTCGCCTTGTACAGAGCTACGTTGCCCTTCTGGAG
CCCTGGTGCGAGTGGAACGCCTGCTCACGCCAGTTCATTTTGGGCATGTCTCTATTGGAG
CTGGGAGAGTCGGAGGCTGCGTACACGTCGTTCTGCCGCGCTGCCAAGGGTGTCAGCACG
GAACCCTTCCTTAGATCGCTAGTGGCGCCCCACGACACCGCACTCACGCAACACCAGGCG
CTAGTATTGTACTACATGAAGGTCATCAAGTTATTCGAGATCCATGATGCTGGAGCCTGC
GTCGTGAGATTAGCGGAGACGGCTATCAGTATAGCTGATAAGGATGACCCTAATCTGGCA
ATGTTCCAGTGGGTTGTATTCAAGTGGCACCTGTCCGGTGGCCGAGTGTCCCGGGCCCTG
AGTGCAGCCGCCGCAAACCCAGCAGCGAGCGCCCGAGCAGCCGCCGCCGCTGCCCTACTC
ACTACCCTCGCGGAGCGTAAACAGCTATCGGCGCTGGTGTCGTGTGGGTCGCTGGCTTTG
GAAGCGGAGCGAGCGGCCGCGGCTCGCGCCAAGCTGCACGACCCCTACCCACACAACCCC
TACTACGATTTCCTGTACGCGCTGCATCTTTCCAGGCATCACTATCGAAAAGCTGCGGCG
GTAGTGTACGAGCGTGCGGCGCGGTGTGCGGGCGAGAGCGGCCCGGCGCGCCGGCGCTGG
CTGGCGGCGGCGCTCACCTGTCTGAGGCTCGCGCAACCCAGACACGCCTTCCTCGCCAGA
CCTGACAGGACGCGGAACTCTAACGACGCTCTGCAGATTATTGGTCCCGAAGAACTTGCA
GCCGAATTACGCGAGGAAGTTCCAGAATCCTTAGATCCGGTTCAGCAGGCTTTACTCAAA
ACGGATAACATAGATTTTGACTACTTATATCCAAATTTGAAAGAAGCTGATCCGGAAACT
CTTCTAGCGGTGATGAAGAGGGCGATCAGTACCGGCCAGTTTATGCCACATTGGTTTCTT
CAAAGGTTTTTGGAGCTGGAGCCTAATTCGTGTATTCGCGCCATGCTGAGCGGCGGGCGG
GCTGTGGAAGCTGCTGAACTGTGTTGTGCTGCACTACGTCGCGACGCCCTGGCCCTTGTG
CCGACCACCAACGCACCACCACGCGCCTCGCCACTGTCACTAGCCGACTTACTGCTACAT
GAACTGACTGAACATGATCACAATCCAAGAGTCAGAGAGGTTTACAATGACTTGCAGCTG
ATAGTTGAAGAGTATACCAAAATGATAGATCGCACATCGGAAGACCTAAAACTATCACAG
TTAAAATACGGAATGACCAATTAG
Protein sequence:
MEFVDAIPVTFKEITPNHNIPEKWKEVVLNTGGTHSTLQDIKLPHKAGGYWYKDSKRANT
RNRFIYWQTTSDSIELSEASLDVNLSGANLRCKVAAGTPPLNNLEFYEKTSSQQLVILAA
TVSSVHRLVFPHPDLLDRKSTFGSMCSICPSIFHDTSSLNNPNNYYILNQYSNTNTGVAH
SCASLLRDSGEAVFALAFGYGGEGGLLLVKLPLAGSAVTLSLKRESTVPRFLSGITGALR
GKSDGVDTYGVVLTNGLVVAICGDNCLRVWSLDDGGVPTAVSTSLSQTLVKPKPPPHGHM
LQYTTGLDGSIILVAYLSFPNECEFVVMKMHDGGVGAARFTQMCHIFGPQLDLLDYTIGY
GDGNHVIWALWTQPDGDAVVTTTGIGPEAQWRAVAGRELPPSLPQLSSLNMYRDRLLAPG
LFPPAVIRKALVIYRRQWGGEGGEGDVDLGEACVSAVQARLRTLTARHQPADHSHLMHKC
WTDLYSWCMQYMEGLQKPLGLMVSKHYKESESGWWCGVVRRAGVSLVRQLEPYERVMLSP
EDTLPDTVFRGSGEVGPVSSEAMRVVVAGARWERGATPAGAAELERRLFACAAPQHRLLP
RLLHLLLQPPEDAATPTLSPEQIDEISAILEPINDLQNAVLNLNEALRLDVPEIDSSDND
DTAEYDNLFASDLGVAIVTEAIRQMAEMRCRVVRGALAALGAARGAGGVPGAGHCANGFI
GAVPIEAHRSRWGECRGLRGWGGGGAQGAVAAYTAAAGGRRARRKLAAARAPLHWHQALP
LMAYHLAYQLWAVSGGFEFGWWLASINQPRLVQSYVALLEPWCEWNACSRQFILGMSLLE
LGESEAAYTSFCRAAKGVSTEPFLRSLVAPHDTALTQHQALVLYYMKVIKLFEIHDAGAC
VVRLAETAISIADKDDPNLAMFQWVVFKWHLSGGRVSRALSAAAANPAASARAAAAAALL
TTLAERKQLSALVSCGSLALEAERAAAARAKLHDPYPHNPYYDFLYALHLSRHHYRKAAA
VVYERAARCAGESGPARRRWLAAALTCLRLAQPRHAFLARPDRTRNSNDALQIIGPEELA
AELREEVPESLDPVQQALLKTDNIDFDYLYPNLKEADPETLLAVMKRAISTGQFMPHWFL
QRFLELEPNSCIRAMLSGGRAVEAAELCCAALRRDALALVPTTNAPPRASPLSLADLLLH
ELTEHDHNPRVREVYNDLQLIVEEYTKMIDRTSEDLKLSQLKYGMTN