New model in OGS2.0 | DPOGS213357  |
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Genomic Position | scaffold838:- 6387-8675 |
See gene structure | |
CDS Length | 633 |
Paired RNAseq reads   | 762 |
Single RNAseq reads   | 2173 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | ND |
Best Drosophila hit   | vacuolar protein sorting 28 (3e-82) |
Best Human hit | vacuolar protein sorting-associated protein 28 homolog isoform 1 (4e-76) |
Best NR hit (blastp)   | hypothetical protein AaeL_AAEL002324 [Aedes aegypti] (3e-89) |
Best NR hit (blastx)   | hypothetical protein AaeL_AAEL002324 [Aedes aegypti] (7e-86) |
GeneOntology terms    | GO:0005575 cellular_component GO:0030036 actin cytoskeleton organization GO:0007291 sperm individualization GO:0048749 compound eye development GO:0005515 protein binding GO:0009792 embryo development ending in birth or egg hatching GO:0010797 regulation of multivesicular body size involved in endosome transport |
InterPro families    | IPR007143 Vacuolar protein sorting-associated, VPS28 IPR017899 Vacuolar protein sorting-associated, VPS28, C-terminal IPR017898 Vacuolar protein sorting-associated, VPS28, N-terminal |
Orthology group | MCL12272 |
Nucleotide sequence:
ATGCAAGATACGAGACCAGAGTTATATGAGGAGGTGAAGCTGTACAGAAATGCCAGGGAG
AGAGAAAAGCATGACAACATGGCCGAACTCTATGCTGTGGTCAGCACCCTTCAACATCTA
GAAAAAGCTTACATGCGGGACTGTGTGCGTGCACAGGAGTACACTGCTGCCTGCAGTCGG
TTACTCGTACAATACAGAGTAGCCTTCAAGCAAGTTACCGGAGAAGAGTTCCCAAATATT
GAGGCATTTGTTACAAAATTCAGGTTAGATTGTCCGGCGGCATTAGAGAGGATAAGGGAG
AACAAACCAAACCTGATTAAAGATGACAAAGGGAACACTAATAAATATATCGCTGAAATT
GTATCGCTGTTCATAACGTTGATGGATAAGTTGCGCCTGGAATTCCGCGCCATGGACATG
ATCCAGCCAGAGTTACGTGACCTCCGGGACACCATGGAACGTCTCACCATGCTGCCTGAT
GACTTCGAGGGGAAGCTCAAGGTCCAAGAATGGCTGGACAAGCTGTCGGAGATGTCGGCT
TCAGATGAACTATCAGAGTCCCAAGTGCGACAGCTGCTGTTTGACCTGGAAACTTCATAT
GGAGCGTTCAACAAACTACTCCACAAGGATTGA
Protein sequence:
MQDTRPELYEEVKLYRNAREREKHDNMAELYAVVSTLQHLEKAYMRDCVRAQEYTAACSR
LLVQYRVAFKQVTGEEFPNIEAFVTKFRLDCPAALERIRENKPNLIKDDKGNTNKYIAEI
VSLFITLMDKLRLEFRAMDMIQPELRDLRDTMERLTMLPDDFEGKLKVQEWLDKLSEMSA
SDELSESQVRQLLFDLETSYGAFNKLLHKD