New model in OGS2.0 | DPOGS203769  |
---|---|
Genomic Position | scaffold2604:- 24096-43835 |
See gene structure | |
CDS Length | 5259 |
Paired RNAseq reads   | 2211 |
Single RNAseq reads   | 5726 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013403 (1e-07) |
Best Drosophila hit   | Ca[2+]-channel protein alpha[[1]] subunit D, isoform C (0.0) |
Best Human hit | voltage-dependent L-type calcium channel subunit alpha-1C isoform 19 (0.0) |
Best NR hit (blastp)   | Ca[2+]-channel protein alpha[[1]] subunit D, isoform C [Drosophila melanogaster] (0.0) |
Best NR hit (blastx)   | GL21044 [Drosophila persimilis] (0.0) |
GeneOntology terms    | GO:0005891 voltage-gated calcium channel complex GO:0005245 voltage-gated calcium channel activity GO:0006816 calcium ion transport GO:0006936 muscle contraction GO:0042045 epithelial fluid transport GO:0016324 apical plasma membrane GO:0016323 basolateral plasma membrane GO:0009790 embryo development GO:0005509 calcium ion binding GO:0055085 transmembrane transport |
InterPro families    | IPR002077 Voltage-dependent calcium channel, alpha-1 subunit IPR005446 Voltage-dependent calcium channel, L-type, alpha-1 subunit IPR005821 Ion transport IPR014873 Voltage-dependent calcium channel, alpha-1 subunit, IQ domain |
Orthology group | MCL10088 |
Nucleotide sequence:
ATGAATGCTCAAGATGGCGGCGACGTGGCCGCTAGCACACCAGTCACTAACGCAACACCT
GACGCTGGCCCCCTCATTCCGGTCCCCGTGGCCCCCCGCAAGCCGCCGCGGAGGGGCCCT
AAGGTTCCACAAGAGAGGCCCAAGAGGGCCCTCTTCTGTCTCACCCTCAAAAATCCACTC
CGAAAGCTCTGCATTAACATCGTTGAATGGAAACCATTCGAGTGGATGATTCTGACTACT
ATATTCGCTAATTGCATCGCCCTCGCCGTCTACACTCCCTACCCCGCCAGCGACTCCAAC
TACACGAACTGGGTTCTGGAGAAAATAGAATACATTTTCCTAGTGATCTTCACTGGAGAG
TGTGTTATGAAGATAATCGCGTACGGTTTCGTCATGCACCCGGGGTCCTACCTGCGGAAC
GGCTGGAACTTGTTGGATTTTACCATCGTTGTTATCGGTATGGTCAGCACAGTTCTTTCG
AGTATCTTTAAAGACGCGTTTGACGTCAAAGCGCTGAGAGCCTTCCGCGTACTGCGACCT
CTGAGGCTCGTCTCAGGAGTTCCCAGTTTACAGATCGTGTTGAACTCGATCCTGAAAGCG
ATGGTTCCCTTACTGCACATCGCGTTGCTGGTCATCTTCGTCATCATCATATACGCCATC
ATCGGCCTCGAGCTGTTCTCCGGCAAAATGCACAAATCCTGCTACAATAAGAGAACAAAC
GAAATAATGGAAAACCCTCACCCCTGCGACGTGGACAACGGGTTCAACTGTTCCTCCATC
GGCGAGGAGATGGAGTGTCGAGATGGCTGGATAGGACCTAACTTCGGCATCACCAACTTT
GACAACTTCGGCCTCTCCATGCTCACCGTCTTCCAGTGCATCACACTAGAAGGCTGGACT
GATGTCATGTACAATATCCAAGATGCAATGGGAAACAGTTGGGAATGGATATACTTTGTG
TCGATGGTAATTCTCGGAGCCTTCTTCGTCATGAATCTTATCCTCGGTGTGTTGTCCGGA
GAGTTTTCCAAAGAGAGAGAGAAAGCGAAGAACAGAGGCGACTTCCAGAAGTTGAGGGAA
AAACAGCAGTTGGAAGAAGATTTGAAAGGTTACCTGGACTGGATCACACAAGCGGAGTAC
CTCGAGCCTCTCGGAGATAGAGAGACGGAACAAAGAGACTATGGAATTGGAATTGATGTG
AACTATTTGGGTCAAACACAAACCGAGCACGACTCCACGGATCATCTCGGAATCGAAGCG
ATCGAGCCGCAGAAGACGGCCAGGGGGAAGATGTGGAAGAAAGATTTCGATAAGGTGAAT
CGTCGTATGAAGCGCGCGTGTCGCAGGGCAGTGAAATCTCAGACCTTTTATTGGCTCATC
ATCGTGCTGGTGTTTCTGAATACAGTAGTCCTCGCCAGCGAACACTATCACCAACCAACT
TGGCTGGATCATTTTCAAGAGTACGGCAACGCGATGTTCGTAGCTCTCTTCACGTTGGAG
ATGTTGGTCAAAATGTACAGCTTGGGATTGCAAGGCTACTTCGTGTCTCTGTTCAATCGA
TTCGATTGTTTCGTGGTGGTCGGCTCCATCAGCGAGATGGTTCTCACCAAGACGGAAGTG
ATGCCGCCGCTGGGAGTGTCCGTGCTGCGCTGTGTTCGACTGCTCAGGGTATTCAAGGTC
ACCAAGTACTGGCGCTCGCTGTCAAACCTGGTGGCGTCTCTGTTAAACTCGATCCAGTCA
ATCGCTTCGCTGCTGCTCCTGCTGTTCCTCTTCATCATGATCTTTGCTCTCCTCGGGATG
CAGGTGTTCGGTGGCAAGTTCAACTATGATCCCGTCGAAGAGAAGGACCGGCACAACTTT
GATTGTTTTTGGCAAGCGCTGCTCACAGTCTTCCAAATCCTCACGGGTGAAGACTGGAAC
GCGGTGATGTATGAAGGCATCAAAGCGTACGGCGGCGTCGGAACGTTTGGAATCCTTGCC
TGCATCTACTTCATTATACTCTTCATCTGCGATATTCTGCTAAATGTTTTCTTGGCCATT
GCCGTCGATAATCTGGCAGATGCTGAATCATTAACCAACATCGAAAAGGAGGAAGGTCAA
GCAACGGAAGATCAGCAAGGAGTGGAAGGCCCTGAAGGAGAAGAAGTTGAAGGAGCACTC
GCAGACACAGACGACGAGTACATACACGATGAAGATGCCTACACGACGGATAATTCTGAA
AGAGATTACGAAGAAACAGGTTCAGAAGGCGAACATCACGAGGATCCAGAAGGAGAAGTA
GAAGAAGGTGCAGAAGACAACGGTGAAGGAATCGAAGAAAATCAAGACAGAGACGATTTG
GATAATCTTCAGACGAACCACACAGATGGCGAGTGCGAGGAGGAGGGGACGCTCGTTACC
GCTAGACCGCGGCGCATCTCTGAACTGAATATGCCAAATCAGACGCCGCCGATACCGAAC
GCTAGTAGTTTCTTCATATTCTCACCGACAAACAGGTTTCGAGTGTTCTGCTACAAAATG
TCTTCATCATCAACGTTCGGAAACATCATCCTGGTGTGTATCATGCTGTCGTCTGCTATG
TTAGCAGCAGAGGATCCGTTAGACGCTGTGCAGAAAGGCTTTAGGAATTGGCTTCTCAGT
CAGTTCGACATGTTCTTCACGGGGATCTTCACGTTGGAGCTGTTCCTGAAGCTGGTGACA
TACGGCCTGGTACTTCATCGTGGCGCCTTTCTCCGTTCAGCATTTAATGTGTTGGACATG
CTAGTCGTCTGTGTGTCACTCATCTCCATGAGCTTTAAGTCTGGAAGTATATCAGTTGTG
AAAATATTGCGAGTGTTCAGGGTGCTGAGGCCACTAAGAGCCATCAACAGGGCAAAGGGC
CTTAAGCACGTTGTTCAATGCGTGATCGTTGCTATCAAAACGATCGGAAACATTTTGTTG
GTAACGTCCTTGCTTCAATTCATGTTCGCGGTCATGGGAGTTCAAATGTTCAAGTATGTA
GTGAAATGTGTGATAGTAGCCATTAAGACTATAGGAAATATAATGTTAGTTACGTATCTA
TTACAATTTATGTTCGCTGTCGTCGGTGTACAGTTATTTAAGGGTAAATTTTTTAGATGT
AATGATATTTCAAAAATGACTAAAGCTGAGTGTCAAGGGACGTATTTAGTGTTCGAAAAC
AGAAATTATGTAGTTAGGGATAGAGAATGGAAGAGAAATGATTTTCATTTTGATAATGTG
ATGAAAGGGATGCTTACTCTCTTCACTGTGTCTACTTTTGAAGGATGGCCAGGGTTATTG
TATGTGTCTATAGACTCGAATGCCGAGGACCGTGGTCCTATAACTAACTTCCGTCCAATT
GTTGCAGCCTACTACATAATTTATATTATTATTATTGCCTTCTTTATGGTTAATATATTC
GTGGGTTTCGTCATAGTGACATTCCAGAACGAGGGTGAGCAGGAATACAAGAACTGTGAA
CTTGATAAGAATCAGAGGAATTGTATAGAGTTCGCATTGAAAGCCAAACCCATAAGAAGG
TACATCCCAAAACACCGCATTCAATACAAAGTGTGGTGGTTCGTGACGTCACAGCCGTTC
GAGTACGCGATCTTCGTCCTCATCATGATCAACACCATCACGCTGGCGATGAAGTACCAC
GATCAGTCCCCGGAGTACAGTCGGGCTTTGGATATGTTGAACATGATATTCACAGCGGTG
TTCGCTCTAGAGTTTATATTCAAACTAGCGGCCTTTAGATTTAAGAACTATTTCGGGGAC
GCGTGGAACACTTTCGACTTTATCATCGTCTTGGGCAGTATCATCGACATCGTTGTCTCG
CAAGTAAACGAACTCAAGAACCAGGGAAGTGGCGTGCAAAGAGCGCATGTCGTCAAGGAA
AGCTCCATCCCATCCATCAACTTCTTCCGTTTGTTTCGTGTCATGAGACTTGTGAAGCTA
CTCTCCAGAGGCGAGGGCATACGAACACTTTTATGGACTTTTATCAAGTCTTTTCAAGCA
CTTCCCTATGTAGCCTTGCTCATCTTGATGTTATTTTTCATTTACGCCGTTGTTGGGATG
CAGGTTTTTGGTAAAATAGCAATAGACGATGAAACGCCCATCACCAGAAACAATCATTTT
CAAACATTTCCGCAAGCTATACTCGTGCTCTTCCGGTCTGCTACCGGTGAGGCTTGGCAG
GATATAATGATGGGCGTGTCTCCGGATCCAGATGTACGATGTGACGAGAATTATAAAGAA
GAAGAAGGCGAAGACGAGGGCGGTGGTTCCTGCGGCTCAGTGCTAGCCTTCCCATACTTT
ATCTCATTCTATGTACTTTGTTCCTTCCTTATTATTAATTTATTTGTTGCTGTCATTATG
GATAATTTTGACTATTTGACCAGAGATTGGTCAATTTTGGGACCACACCACTTAGATGAA
TTTATAAGATTATGGAGTGAATATGATCCTGACGCCAAGGGACGTATAAAACACTTAGAT
GTAGTTACGTTACTAAGAAAAATAAGCCCACCACTAGGCTTCGGCAAGTTATGTCCTCAC
CGCGTCGCGTGTAAGCGTCTCGTGTCAATGAACATGCCACTCAACTCGGACGGCACCGTC
CTGTTCAATGCGACTCTGTTCGCCGTCGTCCGGACCTCGCTCAAGATCAAAACTGACGGT
AATATCGACGACTGCAACACAGAGCTTCGAGCCGTCATCAAGAAGATCTGGAAAAGAACT
TCTCCAAAACTTTTAGACCAGGTGGTACCTCCACCCGGAGATCCTAACGAAATCACCGTA
GGGAAGTTTTATGCTACTTTCCTTATTCAAGATTACTTCAGACGGTTCAAAAAGCGCAAG
GAACAAGAGTTACGGCAGAACGACGAACAGACACATCAGATGACGCTGCAAGCTGGGTTA
AGAACTCTACATGAAGCAGGGCCGGAGTTGAAGCGAGCCATCTCTGGGAACCTCGACGAC
ATCGTTCCTGAGAGCGACGTGCCTATGCACAGGCCTGGAGTGTGGTCAAGCATACGCAGG
CACGGACCAAACAGACATTTTCACAGACATCGAAAACACGGGGATTCACCTCAAGAAAAT
GTTGGAAACCATTTAAGTTCCATGATGCAGCGCGAGTATGGAGTGGGACCATTACCCTTA
GCACCTAATCTAGCCAACGGCCAGCCTAAGGAACAAATACCGCTTAGACCATTAATATTC
AACGGGGAATCAGAGAAAATATACCAAGTTCTAGAGTGA
Protein sequence:
MNAQDGGDVAASTPVTNATPDAGPLIPVPVAPRKPPRRGPKVPQERPKRALFCLTLKNPL
RKLCINIVEWKPFEWMILTTIFANCIALAVYTPYPASDSNYTNWVLEKIEYIFLVIFTGE
CVMKIIAYGFVMHPGSYLRNGWNLLDFTIVVIGMVSTVLSSIFKDAFDVKALRAFRVLRP
LRLVSGVPSLQIVLNSILKAMVPLLHIALLVIFVIIIYAIIGLELFSGKMHKSCYNKRTN
EIMENPHPCDVDNGFNCSSIGEEMECRDGWIGPNFGITNFDNFGLSMLTVFQCITLEGWT
DVMYNIQDAMGNSWEWIYFVSMVILGAFFVMNLILGVLSGEFSKEREKAKNRGDFQKLRE
KQQLEEDLKGYLDWITQAEYLEPLGDRETEQRDYGIGIDVNYLGQTQTEHDSTDHLGIEA
IEPQKTARGKMWKKDFDKVNRRMKRACRRAVKSQTFYWLIIVLVFLNTVVLASEHYHQPT
WLDHFQEYGNAMFVALFTLEMLVKMYSLGLQGYFVSLFNRFDCFVVVGSISEMVLTKTEV
MPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIMIFALLGM
QVFGGKFNYDPVEEKDRHNFDCFWQALLTVFQILTGEDWNAVMYEGIKAYGGVGTFGILA
CIYFIILFICDILLNVFLAIAVDNLADAESLTNIEKEEGQATEDQQGVEGPEGEEVEGAL
ADTDDEYIHDEDAYTTDNSERDYEETGSEGEHHEDPEGEVEEGAEDNGEGIEENQDRDDL
DNLQTNHTDGECEEEGTLVTARPRRISELNMPNQTPPIPNASSFFIFSPTNRFRVFCYKM
SSSSTFGNIILVCIMLSSAMLAAEDPLDAVQKGFRNWLLSQFDMFFTGIFTLELFLKLVT
YGLVLHRGAFLRSAFNVLDMLVVCVSLISMSFKSGSISVVKILRVFRVLRPLRAINRAKG
LKHVVQCVIVAIKTIGNILLVTSLLQFMFAVMGVQMFKYVVKCVIVAIKTIGNIMLVTYL
LQFMFAVVGVQLFKGKFFRCNDISKMTKAECQGTYLVFENRNYVVRDREWKRNDFHFDNV
MKGMLTLFTVSTFEGWPGLLYVSIDSNAEDRGPITNFRPIVAAYYIIYIIIIAFFMVNIF
VGFVIVTFQNEGEQEYKNCELDKNQRNCIEFALKAKPIRRYIPKHRIQYKVWWFVTSQPF
EYAIFVLIMINTITLAMKYHDQSPEYSRALDMLNMIFTAVFALEFIFKLAAFRFKNYFGD
AWNTFDFIIVLGSIIDIVVSQVNELKNQGSGVQRAHVVKESSIPSINFFRLFRVMRLVKL
LSRGEGIRTLLWTFIKSFQALPYVALLILMLFFIYAVVGMQVFGKIAIDDETPITRNNHF
QTFPQAILVLFRSATGEAWQDIMMGVSPDPDVRCDENYKEEEGEDEGGGSCGSVLAFPYF
ISFYVLCSFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFIRLWSEYDPDAKGRIKHLD
VVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAVVRTSLKIKTDG
NIDDCNTELRAVIKKIWKRTSPKLLDQVVPPPGDPNEITVGKFYATFLIQDYFRRFKKRK
EQELRQNDEQTHQMTLQAGLRTLHEAGPELKRAISGNLDDIVPESDVPMHRPGVWSSIRR
HGPNRHFHRHRKHGDSPQENVGNHLSSMMQREYGVGPLPLAPNLANGQPKEQIPLRPLIF
NGESEKIYQVLE