| New model in OGS2.0 | DPOGS208909 |
|---|---|
| Genomic Position | scaffold350:+ 96300-97666 |
| See gene structure | |
| CDS Length | 810 |
| Paired RNAseq reads | 106 |
| Single RNAseq reads | 314 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002482 (1e-109) |
| Best Drosophila hit | Ercc1 (3e-68) |
| Best Human hit | DNA excision repair protein ERCC-1 isoform 2 (7e-61) |
| Best NR hit (blastp) | excision repair cross-complementing 1 ercc1 [Aedes aegypti] (8e-78) |
| Best NR hit (blastx) | DNA excision repair protein ERCC-1 [Culex quinquefasciatus] (2e-76) |
| GeneOntology terms | GO:0000014 single-stranded DNA specific endodeoxyribonuclease activity GO:0006296 nucleotide-excision repair, DNA incision, 5'-to lesion GO:0046982 protein heterodimerization activity GO:0005515 protein binding GO:0005634 nucleus GO:0003684 damaged DNA binding GO:0006289 nucleotide-excision repair GO:0043234 protein complex GO:0007131 reciprocal meiotic recombination |
| InterPro families | IPR004579 DNA repair protein rad10 IPR011335 Restriction endonuclease, type II-like IPR010994 RuvA domain 2-like |
| Orthology group | MCL12178 |
Nucleotide sequence:
ATGGAAATAGAAGACGGTTTTGATGATCTTCTAGGTGAAGTAGAAGTTCCAACATCACCA
AAGAAGCCTAAAAGTGGTGAAGACGTCGTAGCTGGAACAGCACCAAAGCCAACAGCGACC
AAAACACATTGCGTTCTAGTAAATCAAAAGCAGCGCGGAAATCCTTTGTTGAAATTCATT
ACAAGTGTCCCATGGGAATATGATGAAATAGTTCCAGATTATGAAATAGGCAAGACTATT
GGGATTCTGTTTCTTTCATTGCGGTATCATAATTTAAACCCTGACTATATAAATAACAGA
CTTAAAGAATTAGGCAAGAAGTATGACCTCAGAGTTCTTTTAGTTCAGGTTGATTTGAAA
GACCCACATGTTGCCTTGAAGAATCTAACTAGAATATGCCTTCTGACAGATATGACATTA
ATGTTAGCGTGGAGTCCGGAGGAATCAGCTAAAATAATAGAAAATTATAAGATATATGAA
AATAAACCACCTGATAGAATAATGGAGAAAATTGAAAATGATCCACATCAAAAGATAATA
AATGCACTGTCATCAATAAAGCCCGTAAATAAGACTGATGCTATGACATTAATAACAAAA
TTTGGAACATTAGAGAACATCATTAAAGCAACGGAACAGCGATTAGCTGATTGTCCCGGT
TTTGGGGTTACTAAAGCTAAAAAGTTGCACAAGGCTCTGCACGAGCCGTTCTTAAAGAGA
GGACAAATGAAGCTTCAAAGTAATGATGAGTTTTCAGAAGAAATCTGCTTGGAAGATATT
GAGAAAATGGAAAATGAAGGGAAAAAATAA
Protein sequence:
MEIEDGFDDLLGEVEVPTSPKKPKSGEDVVAGTAPKPTATKTHCVLVNQKQRGNPLLKFI
TSVPWEYDEIVPDYEIGKTIGILFLSLRYHNLNPDYINNRLKELGKKYDLRVLLVQVDLK
DPHVALKNLTRICLLTDMTLMLAWSPEESAKIIENYKIYENKPPDRIMEKIENDPHQKII
NALSSIKPVNKTDAMTLITKFGTLENIIKATEQRLADCPGFGVTKAKKLHKALHEPFLKR
GQMKLQSNDEFSEEICLEDIEKMENEGKK