New model in OGS2.0 | DPOGS202879  |
---|---|
Genomic Position | scaffold273:- 221277-224956 |
See gene structure | |
CDS Length | 1104 |
Paired RNAseq reads   | 869 |
Single RNAseq reads   | 2054 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA004202 (8e-130) |
Best Drosophila hit   | Nup44A, isoform A (3e-95) |
Best Human hit | nucleoporin SEH1 isoform 2 (1e-105) |
Best NR hit (blastp)   | sec13-like protein [Bombyx mori] (6e-180) |
Best NR hit (blastx)   | sec13-like protein [Bombyx mori] (3e-166) |
GeneOntology terms    | GO:0003674 molecular_function GO:0051301 cell division GO:0005643 nuclear pore GO:0007049 cell cycle GO:0015031 protein transport GO:0055085 transmembrane transport GO:0006810 transport GO:0007059 chromosome segregation GO:0051028 mRNA transport GO:0005634 nucleus GO:0000776 kinetochore GO:0007067 mitosis |
InterPro families    | IPR011046 WD40 repeat-like-containing domain IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR019775 WD40 repeat, conserved site IPR019781 WD40 repeat, subgroup IPR001680 WD40 repeat IPR015943 WD40/YVTN repeat-like-containing domain |
Orthology group | MCL13482 |
Nucleotide sequence:
ATGAGTGAATTAGGTGGGTGTAATTTATTTGAATCACAAGCAATAGTTGCCGATCACAAA
GACTTAATACATGATGTGGCTTACGACTTCTATGGGGAGAGAATGGCGACATGCTCTAGC
GACCAGTATGTAAAGGTGTGGGATTCTGATGGGCAAGGTGGTTGGAAACTGACTGCAAGC
TGGAAAGCACATCACGGCTCAGTGTGGAAAGTCACATGGGCACATCCTGAGTTTGGACAA
GTTCTGGCTACTTGTTCCTTTGATAGGACAGCTGCTATATGGGAAGAAGTTGGTGACACA
GCAGCATCGGGTACAGAGAAAGGGCTCAGGACTTGGGTGAAGAGATCAAATCTAGTGGAT
TCCAGGACTTCGGTCACAGATGTGAAGTTTGGGCCCAAGCATCTAGGGTTACTATTGGTG
ACATGTTCTGCTGATGGTATTATAAGGATATATGAAGCTCCCGATGTAATGAATTTAGCA
CAATGGACCTTGCAACATGAAATACCAACTAAGGTCTCTATCAGTTGTCTGTCGTGGAAC
CCATCATTATCAAGAAGTAGCAGTAACCCACCGATGTTGGCGGTGGGCAGCGACGAGCCC
AGTGTTGCTGATAAAGCCAGTTCAGAACGAGTCTTCATATATGAGTACAGTGAATCCTCA
AGGCGTTGGACCAGGACGGAGTGTTTGTCGTCTGTGGTGGAACCGGTCAATGACCTCGCC
TTCGCGCCGAACCTCGGCCGCTCCTTCCACCTGCTCGCTGTGGCCACTAAAGACGTGAGG
ATCATCAAAATTGAACCGTTGCCTGAGTCTTCCGGTTCCGCTAACGGCAGCGTCCGCTTC
AAGTCGGAAGTGTTGGCCGCCTTCGAGGAGCATTCGTCTTGTGTGTGGCGCGTCGCCTGG
AACGTTACCGGGACCATGCTGGCGTCTTCCGGGGACGACTGCTGTATCAGGCTATGGAAG
ATGCAATACATGAACCAGTGGAAAGGTGTCGGTGTGTTCAAGAGTGAGGCGACTGGGGGA
GAAGCGACCGCGCCGGCGCGTGCTCACACCACCTATACAAGACTGGCGCCCATGGCCAAC
CCAGCACACATGCCCTACCACTGA
Protein sequence:
MSELGGCNLFESQAIVADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGQGGWKLTAS
WKAHHGSVWKVTWAHPEFGQVLATCSFDRTAAIWEEVGDTAASGTEKGLRTWVKRSNLVD
SRTSVTDVKFGPKHLGLLLVTCSADGIIRIYEAPDVMNLAQWTLQHEIPTKVSISCLSWN
PSLSRSSSNPPMLAVGSDEPSVADKASSERVFIYEYSESSRRWTRTECLSSVVEPVNDLA
FAPNLGRSFHLLAVATKDVRIIKIEPLPESSGSANGSVRFKSEVLAAFEEHSSCVWRVAW
NVTGTMLASSGDDCCIRLWKMQYMNQWKGVGVFKSEATGGEATAPARAHTTYTRLAPMAN
PAHMPYH