New model in OGS2.0 | DPOGS212387  |
---|---|
Genomic Position | scaffold219:+ 49685-50738 |
See gene structure | |
CDS Length | 663 |
Paired RNAseq reads   | 402 |
Single RNAseq reads   | 989 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012118 (9e-91) |
Best Drosophila hit   | sans fille (8e-72) |
Best Human hit | U2 small nuclear ribonucleoprotein B'' (2e-67) |
Best NR hit (blastp)   | U1 small nuclear ribonucleoprotein A [Apis mellifera] (1e-94) |
Best NR hit (blastx)   | AGAP011637-PA [Anopheles gambiae str. PEST] (6e-81) |
GeneOntology terms    | GO:0048477 oogenesis GO:0000398 nuclear mRNA splicing, via spliceosome GO:0030532 small nuclear ribonucleoprotein complex GO:0005681 spliceosomal complex GO:0019099 female germ-line sex determination GO:0005692 U11 snRNP GO:0030619 U1 snRNA binding GO:0003729 mRNA binding GO:0005634 nucleus GO:0007539 primary sex determination, soma GO:0008380 RNA splicing GO:0005685 U1 snRNP GO:0005686 U2 snRNP GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0005515 protein binding GO:0043234 protein complex GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome |
InterPro families    | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
Orthology group | MCL12246 |
Nucleotide sequence:
ATGGACATACGGCCGAACCACACAATATATATAAACAATCTCAATGAAAAAATTAAGAAG
GAGGAACTTAAAAAGTCCCTCTATGCTATATTTTCTCAATTTGGGCAGATTTTAGAAATC
GTTGCACTGAAAACACTCAAGATGAGGGGTCAAGCATTTGTTATATTCAAAGAAATATCC
AGTGCAACCGTCGCTTTGAGGAGTATGCAAGGATTCCCATTTTATGACAAACCTATGAGA
ATACAGTATTGTAAAACTGATAGTGATGTTATAGCAAAGATGAAGGGAACCTTCCAAGAA
CGACCTAAAAGACCAAAACTGCCAAAAGGTTCCGATGAGAAGAAGAAAAAGAACAAAGAT
CCCAATAGACCAAATGTGCCTGGATTTGGACAACCAAGTGTTCTTAACAATGTTAACGCT
GAACAGCCACCAAACCAAATACTGTTTCTTACTAATCTTCCTGATGAAACATCAGAAATG
ATGTTATCTATGTTGTTTAACCAGTTCCCTGGTTTTAAGGAAGTTCGACTGGTGCCAAAC
AGACATGATATCGCCTTTGTGGAGTTTGCTAATGAAATGCAATCAGCGGCTGCTAAAGAA
GCCCTCCAAGGCTTCAAGATCACTCCCACTCATGCTATGAAAATATCATTTGCAAAGAAA
TAG
Protein sequence:
MDIRPNHTIYINNLNEKIKKEELKKSLYAIFSQFGQILEIVALKTLKMRGQAFVIFKEIS
SATVALRSMQGFPFYDKPMRIQYCKTDSDVIAKMKGTFQERPKRPKLPKGSDEKKKKNKD
PNRPNVPGFGQPSVLNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPN
RHDIAFVEFANEMQSAAAKEALQGFKITPTHAMKISFAKK