| New model in OGS2.0 | DPOGS203727 |
|---|---|
| Genomic Position | scaffold1778:- 18653-22816 |
| See gene structure | |
| CDS Length | 1407 |
| Paired RNAseq reads | 923 |
| Single RNAseq reads | 2381 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013363 (4e-27) |
| Best Drosophila hit | Hormone-receptor-like in 78, isoform C (1e-43) |
| Best Human hit | nuclear receptor subfamily 2 group C member 1 isoform c (9e-34) |
| Best NR hit (blastp) | nuclear orphan receptor [Bombyx mori] (6e-148) |
| Best NR hit (blastx) | nuclear orphan receptor [Bombyx mori] (3e-112) |
| GeneOntology terms | GO:0005634 nucleus GO:0004879 ligand-dependent nuclear receptor activity GO:0003700 sequence-specific DNA binding transcription factor activity GO:0003677 DNA binding GO:0048102 autophagic cell death GO:0035071 salivary gland cell autophagic cell death GO:0007424 open tracheal system development GO:0035002 liquid clearance, open tracheal system GO:0008270 zinc ion binding GO:0003707 steroid hormone receptor activity GO:0043565 sequence-specific DNA binding GO:0006355 regulation of transcription, DNA-dependent |
| InterPro families | IPR008946 Nuclear hormone receptor, ligand-binding IPR001628 Zinc finger, nuclear hormone receptor-type IPR000536 Nuclear hormone receptor, ligand-binding, core IPR001723 Steroid hormone receptor |
| Orthology group | MCL11644 |
Nucleotide sequence:
ATGGAGGCCCAGGATCAAATGGAGATCAAGTACAGCGGCAATGAAGTCGGGGGATTGGAG
TTGTGTATTGTGTGTGGGGACAGAGCCAGCGGTAGACACTATGGAGCTATAAGTTGTGAA
GGTTGTAAGGGATTCTTCAAGCGTTCCATCCGCAAGAAGTTAGGATATCAATGCCGAGGC
AGCATGAACTGTGAGGTGACGAAGCACCATCGTAACCGATGTCAATACTGCCGCTTGCAG
AAGTGTCTCGCCTGCGGAATGAGAAGTGACTCGGTTCAACATGAGCGGAAGCCTATCGTT
GATAAGTCCAAAGAGGAACGAACTGCGTACTCCAAACTGCTGGGACTGGCCGGCAGCGCT
CAGTCACAGATAAATCCTAAGGACGAGCCTTCAGATACGTTCAGCGCTGTGTCCCCAGCT
GCCCCAGCTCTTAACTTCGCGCTGGCTGCAGCTGTAGCTTTCAATAAAGGAAATCCAGTG
TCTCCGTACCTGTCGGGAGGAGACGCGGAGGGAGCGAGGCGACATCAGCTGATGCTGCAG
ACACACCTGGCCAAGAACCTGTTCAAGATGGGGCAGTTCGGTGCAATTAACGAGTATCTC
CAGACGGCGTACGGCGCGACCCCGGCCGAGGTGAACCTCAACGCGGTGCACGCCGACGAC
GCACAGAACGAAGAGGAGGGCGTGATCCTGAACACAGCGCAGAGCCTGAGCCTGCCGCTG
TCCCTGCCGGCGGGCGCGGGCGGACCGCTCCGTCTGCACGCTGCCTGCGAGGCCGCCGCC
CGTCTGCTGGCAGCCTGCGTGCGGTGGACGCTCAGCGTGCCCGCCGCCGCCGCCATGCCG
TTCGAGGCGCGAGTGTCCCTGCTGCGGAAGTGCTGGTCGGAGCTGTTCGTGCTGGGTCTG
TGTCGCTGGTCCGAGGCTCTGTCTTTGGGATCCCTGCTGCCGGCGCTGGCGGCGCACCTG
CGAGCCGAGCTCAGGGAAAGGAGCGAGCAGGGACACGGGGTTTCACATGACGACGGAGGC
GCAGAGATAAGTATCTCTGACTACTCGGACGAGCGCATCTCGGAGGTGTGTTCGATGCTG
TGCCGCCTCCACCAGTTCGTGTGTCACATGGAGCAGTTCCGCGTGTCTGACCGGGAGTAC
GCTCACCTGAGAGCTCTCTGTCTCTTCTCGCCCGACGGCGCCCCCGACTTCCTGAGTCAT
AAGCTGCATCAGCTCCAGTCGTCCGTGGTCCGCTCGCTCCGTGCCGCTTGCTCCTCGGAC
GACGAGCGCGCCGCCTGCCTCCTGCTGCAACTGCCGGTGCTGAGGACCTTCAGCGGCAGC
TTCATCGAGGACGTGTTCTTCGTGGGCTTCGTCGGTGACGTCAGCATCGATGACGTCATA
CCCTGCCTGCTCAACGCCGAGCGGTAG
Protein sequence:
MEAQDQMEIKYSGNEVGGLELCIVCGDRASGRHYGAISCEGCKGFFKRSIRKKLGYQCRG
SMNCEVTKHHRNRCQYCRLQKCLACGMRSDSVQHERKPIVDKSKEERTAYSKLLGLAGSA
QSQINPKDEPSDTFSAVSPAAPALNFALAAAVAFNKGNPVSPYLSGGDAEGARRHQLMLQ
THLAKNLFKMGQFGAINEYLQTAYGATPAEVNLNAVHADDAQNEEEGVILNTAQSLSLPL
SLPAGAGGPLRLHAACEAAARLLAACVRWTLSVPAAAAMPFEARVSLLRKCWSELFVLGL
CRWSEALSLGSLLPALAAHLRAELRERSEQGHGVSHDDGGAEISISDYSDERISEVCSML
CRLHQFVCHMEQFRVSDREYAHLRALCLFSPDGAPDFLSHKLHQLQSSVVRSLRAACSSD
DERAACLLLQLPVLRTFSGSFIEDVFFVGFVGDVSIDDVIPCLLNAER