New model in OGS2.0 | DPOGS201600  |
---|---|
Genomic Position | scaffold34260:+ 852-4477 |
See gene structure | |
CDS Length | 1089 |
Paired RNAseq reads   | 419 |
Single RNAseq reads   | 1247 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012212 (1e-08) |
Best Drosophila hit   | ND |
Best Human hit | charged multivesicular body protein 7 (4e-07) |
Best NR hit (blastp)   | hypothetical protein BRAFLDRAFT_125501 [Branchiostoma floridae] (4e-13) |
Best NR hit (blastx)   | hypothetical protein BRAFLDRAFT_125501 [Branchiostoma floridae] (3e-14) |
GeneOntology terms    | GO:0045324 late endosome to vacuole transport GO:0005737 cytoplasm GO:0008565 protein transporter activity GO:0000815 ESCRT III complex |
InterPro families   | IPR005024 Snf7 |
Orthology group | MCL11466 |
Nucleotide sequence:
ATGTTTGATGTTGGGGAAGTGATTTGTGACTGCGATCATAGATGCCAGTTGAGGGGGTAT
GTGGGAGTCCTTCGGTTGGGCCCAGAACTACCCTCTAGAGTCCAACGATATCTGCTTAGC
AAATCTCGAAAAGGTCGCTTGACCGTTAATGGTGACCTGTCTCCCATATCAAAGTATCAG
CAGATACTCCACAACGGACCTGAGAGCTGGGTCCGTTGGGGAGCCCGGCTTGCCTTCAAA
CCGGCTGCCATAGCCATCACTGCTGTCACATCACTGCTACCAGCAAGGCAAGCCACGGAT
AACAACGGTCTACCAAAAGCGAGTATAGACTCCACACAGAGATTTGTTTTGGAGAGTGCC
GTCAAGGAGCAAGCTAATGAGCTGTTGAACAACTTCCCGGCTGGTTCGGAGAGAATTGGC
ACCATCGACGAGCTAATGAGATCCAGCGGTCACACTAATAGAGAGGTCTATGAAGTTCTC
CTGGGTTACTTGGTGTCCCAGGGTATGGCCGTCAAGAGTGGGGATGTCGTGAAAATAGCG
GAACCAAACAAAAAAGTCCAGCCGGTTACGGAAATGGACACGGCGATGGTGAAACTGATG
TCCGCGGAGACGCGGCTGTCCGACGACGTCGCGCGACTGTCGCGAGACGTGTCCGTCGCG
GAGTCTGAGGCGAGGGCCGCCATGAAGCTTGGCAACAAGATCGCTGCTAAGAACCACCTC
AGGAGGAAGATGAGGACCCAGCAGAAGCTGCAGCAGTGTGAGGCAGCGCTTGAGAACATC
AAGGAGCTCATGTTGCAGGCTAGGAACAGTGACGTCACATCCGCCGTCGTAGATACATAC
AGGAACAGCGCCAAAGCTATGAAGCAAACAATGAGAGACGGCGGCCTGGACGAGGACTCT
GTTTACCATACGATGGATGACTTGAAAGATGTTCGTTTCAAATTTGGTCAGGAGAGAGGG
GCTTGGACGGTGGAGGTGACGTTAGATAGGATCCCCTTAAACCTACACCTGGGTCGCAAG
TCCCAAGCACTGTTGAAGCTCCTCTCCCTGCAGCGATGGACCCGGCACCGCACGGGATCC
ATGGAATGA
Protein sequence:
MFDVGEVICDCDHRCQLRGYVGVLRLGPELPSRVQRYLLSKSRKGRLTVNGDLSPISKYQ
QILHNGPESWVRWGARLAFKPAAIAITAVTSLLPARQATDNNGLPKASIDSTQRFVLESA
VKEQANELLNNFPAGSERIGTIDELMRSSGHTNREVYEVLLGYLVSQGMAVKSGDVVKIA
EPNKKVQPVTEMDTAMVKLMSAETRLSDDVARLSRDVSVAESEARAAMKLGNKIAAKNHL
RRKMRTQQKLQQCEAALENIKELMLQARNSDVTSAVVDTYRNSAKAMKQTMRDGGLDEDS
VYHTMDDLKDVRFKFGQERGAWTVEVTLDRIPLNLHLGRKSQALLKLLSLQRWTRHRTGS
ME