| New model in OGS2.0 | DPOGS209232 |
|---|---|
| Genomic Position | scaffold1519:+ 3149-4216 |
| See gene structure | |
| CDS Length | 1068 |
| Paired RNAseq reads | 113 |
| Single RNAseq reads | 471 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011461 (0.0) |
| Best Drosophila hit | replication factor C 38kD subunit (8e-140) |
| Best Human hit | replication factor C subunit 3 isoform 1 (3e-133) |
| Best NR hit (blastp) | PREDICTED: similar to Replication factor C subunit 3 (Replication factor C 38 kDa subunit) (RFC38) (Activator 1 38 kDa subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit) [Apis mellifera] (7e-151) |
| Best NR hit (blastx) | PREDICTED: similar to Replication factor C subunit 3 (Replication factor C 38 kDa subunit) (RFC38) (Activator 1 38 kDa subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit) [Apis mellifera] (2e-144) |
| GeneOntology terms | GO:0016887 ATPase activity GO:0003689 DNA clamp loader activity GO:0005663 DNA replication factor C complex GO:0000166 nucleotide binding GO:0005634 nucleus GO:0006260 DNA replication GO:0005875 microtubule associated complex |
| InterPro families | IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal IPR019483 DNA polymerase III, clamp-loader complex, subunit E, C-terminal IPR003959 ATPase, AAA-type, core IPR003593 ATPase, AAA+ type, core |
| Orthology group | MCL13507 |
Nucleotide sequence:
ATGAGTCTTTGGGTTGATAAACACCGCCCTAAAGATTTAATGAAGCTAGATTATCACAAA
GATCAAGCTGTAAGATTGAAAAGTCTTGTTCAACAAAGTGATTTTCCTCATCTTCTTGTA
TACGGTCCATCAGGAGCTGGTAAAAAAACTAGAATTATGTGCCTACTAAGAGAACTATAT
GGATCCGGATCTGAACGTTTGCGTCAAGAAACAATGCATTTTACAACGCCTTCTAATAAG
AAAATAGAAATAATGACTGTCAGTAGCAATTATCACATTGAGGTCAATCCTACTGATGTT
GGTATACACGATAGAGTTGTTATTATGGATCTTGTAAAAAACGTGGCACAAACGCATCAG
ATCGACTCTGCCGGTCAGCGTGAGTTTAAAGTTGTTATATTAAATGAAGTAGATGACTTA
ACAAAAGATGCACAACATGCTCTTCGTCGTACTATGGAGAAATATGTAAGTACTTGCAGA
CTAATATTAATTGCCAATTCAATTTCAAGAGTTATTACAGCCATAAGATCGCGTTGTTTA
ACAATAAGGGTGCCAGCCCCTACCGAAACAGAAATAGCATCGGTTTTGCATGCTGTTTGT
AAAAAAGAAGGCCTAAGTTTGCCATCGGAACTAGCTATGCGGATAGCAAAAAGTGCAGAT
CGTAATCTACGTCGTGCTTTGTTAATGTGTGAGGCATGTAAAGTACAGCATTATCCATTT
ACCTCTGATCAGAAAGTTCCCGAGCCAGATTGGCAAATATTTATAAGAGATACAGCAGCT
ATGATTTTATCTGAACAATCACCCAAAAAACTTGCTGAAGTTCGTCAAAAGTTATATGAA
TTAATAATACACGGAGTACCACCAGATGTAATATTTGCAGGACTTTTAAAGGAATTAGTT
TGTAACTGTGATATGTCTATGAAATGTAAGATTGCAAGCTATGCAGCCCAGTATGAACAT
AGAATGAGACTGGGTAATAAATCCATATTTCACATAGAAGCATTTGTTGCAAAATTTATG
GCTATTTATAAAAAGTTTTTGGAAGAAGCACTTGGAGATGTATTTTGA
Protein sequence:
MSLWVDKHRPKDLMKLDYHKDQAVRLKSLVQQSDFPHLLVYGPSGAGKKTRIMCLLRELY
GSGSERLRQETMHFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ
IDSAGQREFKVVILNEVDDLTKDAQHALRRTMEKYVSTCRLILIANSISRVITAIRSRCL
TIRVPAPTETEIASVLHAVCKKEGLSLPSELAMRIAKSADRNLRRALLMCEACKVQHYPF
TSDQKVPEPDWQIFIRDTAAMILSEQSPKKLAEVRQKLYELIIHGVPPDVIFAGLLKELV
CNCDMSMKCKIASYAAQYEHRMRLGNKSIFHIEAFVAKFMAIYKKFLEEALGDVF