| New model in OGS2.0 | DPOGS207873 |
|---|---|
| Genomic Position | scaffold691:- 44575-48018 |
| See gene structure | |
| CDS Length | 2526 |
| Paired RNAseq reads | 99 |
| Single RNAseq reads | 328 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008348 (1e-69) |
| Best Drosophila hit | Niemann-Pick type C-1a (1e-87) |
| Best Human hit | Niemann-Pick C1 protein precursor (8e-65) |
| Best NR hit (blastp) | GG23970 [Drosophila erecta] (9e-91) |
| Best NR hit (blastx) | GG23970 [Drosophila erecta] (2e-89) |
| GeneOntology terms | GO:0005765 lysosomal membrane GO:0030301 cholesterol transport GO:0016021 integral to membrane GO:0008158 hedgehog receptor activity GO:0016125 sterol metabolic process GO:0007591 molting cycle, chitin-based cuticle |
| InterPro families | IPR003392 Patched |
| Orthology group | ND |
Nucleotide sequence:
ATGACAAACTCTATGCTTCTGGCTGCTGGTGTCCTCGGAAGATGTCCGACGTGTCTCGGA
AACTTCGTGAGACAGATATGTGAAATGAATTGTGCGCCTGATCAAGCACGTTTCGTGAAC
GTCACGACGATGGTAACTCCGGATAATGTTTTATATGTAAATGAGATCAATTACAGGCTG
TACAATGATTTTATGATTGATGCGCATAAATCATGTTCCGGCGTGATCGTGCCGCAATCC
GGTATCCCTGCTATTAATCTGATGTGTGGTAACGCTCCCGTGTGCGACGCTGACGCTTGG
TTTGGCTTCTCCGGAAACATTTCCGTTAATCCAATCGCTCCCGTTCAAGTAAATTTCCTT
CGATGGCCAACACCTGAAGATTCTATGAACGCAAGAGCGCCGTTGTGCAATGAAACGCTA
GCTGGAAATATCCCGTGCAGTTGTATAGATTGTCTCGCAAACTGCGGAACTTTAGAAGTT
GAAATTCCAGACATTTGTGAAGTGCTAAGCGTCAACTGCATCGGATTTTCGGTAGGGATA
ACCTTTTTTGTGCTCACTGCTATTATTTTCATTATTTTAACTCTGCGAGAGTATAGAAAA
TACAGAAGACAAATATCTGACAGCGAAGACTTGAAATATGTGTATAAAGTAAATGTGGTA
ATCAAAATTTTTCAAAAATGTTTCCAAAATATCGGTATATTCACATCAGATCATCCTGTT
TTGATGATACTTTTTACATCATGGATAGCGTTTGGCGTGTCGATCGGAATATCGCAGATT
ATTGTTACTGCAAATCCTATAGAGCTTTGGTCCGCACCTGATTCCCGTAGTCGTCAAGAA
CTTAATTATTTTAACTCCCGTTTTGGTCCATTTTATCGCGCCTCTCAGGTTTTCATGACA
TTTAATGGTCTAGATCCATTTACAGTTGGTAACATTACATACGGCCCAGCTTTCCGAGTT
GAAGCAATACAGGAATTAATTAAACTTGAAAATGCTATTATAGACATCGGGAAGGATGAC
AATACAGTCACATTAACGGAAGTATGTTATGCACCTACTCGTTATCCTGGAGTGGAAAAA
AGATTTGATCAATGTTTGTCTATGTCTATAGCAACTTATCTTCCCGATAGAAATAATATT
AACAATGAAACATATTTAAACTCTATACAAGGCTGTATTAATAATTACCTTGCACTAAAC
TGTTTGGCTGACTGGGGAGGTGGGGCCGATCCCGACATGTCGTTTGGCGGATTTAGTGAT
AAAAATTATTTAGAAGCTAAAACTTTAATTATAAATTATCCTATAGCAAGTCATTTAAGA
CAGGAGGATATGGTTCCCGTTTTTGAATGGGAAAAGAAATTTATAGATCTTATGCAGGAT
TATGAAAAAAATTGGAAATCAGATTTTGTTGATATAGCGTTTGGGGCTGATAGATCAATT
GAAGACGAAATAGATAGGAACGTACTCTGCGGGGGACTTACATGTAACGAGGATTCACTT
TCAACACAAATATTTGTAGCATCACGGAATACGGAAACTACGTACATTCAAAAGAGTTCA
AATTCTTGGCTGGATGATTTCCTCGAGTGGACAACTTTGCCCGGCTCTTGTTGCAAGTAT
AATTCAACAGACGGTGGGTTTTGTTCAAGTAAAGACGAATCGCCAGAGTGCGAGTACTGT
TCTATTGAAAGATCTGATTATGCAGGTGGCTTAAGACCAGCAGCAGAAGCTTTCGGAAAG
CATATTCCAGCATTCCTCAAAGATCCACCTGGCGAGATTTGTTCCAAGGGTGGATTGGCA
AGTTACGGTGGTAATGTCAATTACGTGTTAGACTCACAAGGTCTAGCAACAGTTTACGAT
ACAAAATTTATGGCATTTCATAAATCACTGGTAACTTCAAAGGATTACTTTTTGGCTGTT
AAAAACGCATACGAAATCTCTGCAAACATAACTAAAACTATACAAACTCGTACAGGATTA
GATGTAGAAGTATTTCCATATTCGGTATTCTATGTCTATTACGAACAGTATTTGACTATT
TGGGAAGATGCATTTGCTTCTATTGGATTCAGTCTTCTCGGAGCTCTATTTATAAATTTC
CTAGTAACCGGTTTTAATTTCTTAACCACTGGTGCTTTGTTATTGAATGTTATAATGATT
GTAGTTGAATTGATGGGCGTAATGTTCATATGGAATATACCTCTGAATGCCGTTTCTACT
ATAAACTTAATTGTGGCTATTGGTATCGCTGTTGAGTTCTGTAGTCATATGGCGTACGCG
TATGCAACTAGTAAATGTCCCCCGAAAGAAAAGGTCCACGATGCCATCAAAAAGGTTGGA
TCTACGATAATCACCGGCATAACTCTGACTAACGTCCCGATCATAGTTCTAGCATTTTCG
TATACTGAGATTATTGAAGTGTTCTTCTTTAGGATGCTGTTTAGTTTGGTGATTTTAGGA
TTTTTGCATGGTATGGTGTTTTTCCCTGTGTTGCTAAGTTTCTTGAACGATATTAAACAT
AGATAG
Protein sequence:
MTNSMLLAAGVLGRCPTCLGNFVRQICEMNCAPDQARFVNVTTMVTPDNVLYVNEINYRL
YNDFMIDAHKSCSGVIVPQSGIPAINLMCGNAPVCDADAWFGFSGNISVNPIAPVQVNFL
RWPTPEDSMNARAPLCNETLAGNIPCSCIDCLANCGTLEVEIPDICEVLSVNCIGFSVGI
TFFVLTAIIFIILTLREYRKYRRQISDSEDLKYVYKVNVVIKIFQKCFQNIGIFTSDHPV
LMILFTSWIAFGVSIGISQIIVTANPIELWSAPDSRSRQELNYFNSRFGPFYRASQVFMT
FNGLDPFTVGNITYGPAFRVEAIQELIKLENAIIDIGKDDNTVTLTEVCYAPTRYPGVEK
RFDQCLSMSIATYLPDRNNINNETYLNSIQGCINNYLALNCLADWGGGADPDMSFGGFSD
KNYLEAKTLIINYPIASHLRQEDMVPVFEWEKKFIDLMQDYEKNWKSDFVDIAFGADRSI
EDEIDRNVLCGGLTCNEDSLSTQIFVASRNTETTYIQKSSNSWLDDFLEWTTLPGSCCKY
NSTDGGFCSSKDESPECEYCSIERSDYAGGLRPAAEAFGKHIPAFLKDPPGEICSKGGLA
SYGGNVNYVLDSQGLATVYDTKFMAFHKSLVTSKDYFLAVKNAYEISANITKTIQTRTGL
DVEVFPYSVFYVYYEQYLTIWEDAFASIGFSLLGALFINFLVTGFNFLTTGALLLNVIMI
VVELMGVMFIWNIPLNAVSTINLIVAIGIAVEFCSHMAYAYATSKCPPKEKVHDAIKKVG
STIITGITLTNVPIIVLAFSYTEIIEVFFFRMLFSLVILGFLHGMVFFPVLLSFLNDIKH
R