| New model in OGS2.0 | DPOGS207888 |
|---|---|
| Genomic Position | scaffold691:+ 23004-26740 |
| See gene structure | |
| CDS Length | 1620 |
| Paired RNAseq reads | 238 |
| Single RNAseq reads | 748 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008475 (1e-72) |
| Best Drosophila hit | ND |
| Best Human hit | protein SMG9 (2e-43) |
| Best NR hit (blastp) | PREDICTED: similar to CG3857 CG3857-PA [Tribolium castaneum] (1e-56) |
| Best NR hit (blastx) | PREDICTED: similar to CG3857 CG3857-PA [Tribolium castaneum] (1e-61) |
| GeneOntology terms | GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
| InterPro families | ND |
| Orthology group | MCL12570 |
Nucleotide sequence:
ATGGCTGATAAAAAGAAAAAAATTATCAACACTAAGGATACTTTACCAAGAAGACCAGTT
ATTTTGAAATCCGATCGTGATGCGTCTAAAGATCTTATTAAAGGAAATCAGGAAAAGGAA
AAACAGCCTACTATAATATTAAAAACTCGAGAACAGAGCACCCCCAAAGAAGATAGACCG
ATAAGTCCGAAATCACAAACGATAGATGCAGATGAACAAAAATGTCCAGTGAAAGAAATG
TCACAACCAGTAAAGTTGTTGGATGAAAATTTGGAATTTAACACTGCAGCTCTTGAGTTC
CTTAATGATTCTAATAATAACTATTTAGTTGTTGGTGTTATGGGTACTCAAAGTGTGGGG
AAATCAATGATTCTTAATCTGATTGCTCGCAACAAACAACATGATGATATATGTCATAAA
ATTCTCCATAGTCATGAACTACCCGCCAACCATAGCACGGAAACAAATGAACTGTCCATG
GAAAACCAATTTGAAAATGTCAGTCTCACCGAGGCGACAGATCTTAAGGAAGATGACAAA
AATCCATTGAAATTTAAAATGCAAGACATTGAATGTATCGAAAAAGGTGTTCATTGCACT
AAAGGTATAGATATGTTTGTTACTAATGACAGAATTATACTGCTTGATTGTCAACCTCTT
TGGTCACCATCGTTAATTGAGGAGACAAGCACCAACCCTGTAACAGCCAGGAGTGCCAAC
ATTATGACAGTTGATTGTTTACAAATTGCTTCATATTTGATGGCTGTATGTCATGTTCTC
ATTGTCATACAGGATTGGTTTGTTGATTATAATTTTATAAGATATATCCAAACAGCAGAG
ATGCTTAAACCGTCACTTTCTGCTTCTAACAATGTAAATACAAGTCAGGAGGTGGAAACA
AGTTCCGGAGAAAGTCATCCCCACTTACTACTATTACACAATAGATGCACGTTGGAAGAT
TTCACGCCTGAGAGCGTGATGACTATGCAAAGCTTTTATAGGAAAGCTTTCCAGAGGTCA
AACCTACAACTAAGTTCTGGCATGTATATGTATAGTGACCCGAACAAGAATGGGATAAAT
ATTGACAATGTTTGTAAAACATATAGCATAACTAACTGTGGACATCCTATCAATTTGTTC
TTATTGCCAGAGATATATAGCGATTATGATAAAAAGGACATATACCGTGGACATCCCTCT
TTCGAGGAACTCGCTAATCGTCTCAAATGGATGGTGGCTGGTGTTAACAGGCATCAAATA
ACGAACGTGCCGAATTTATCAGAGAGAGGATGGTTTCACTTCTGCAACAAAGCCTGGGAG
ACTATACGGAAATGCACCTTCTTTATGGAATATGAAAGATTTTTATTAATAAAAATTAAA
AAAAAAAAGCAGTTTTTATGCGGAATATCAACAAATAAAACCACAATTCGTCTAGATTAT
TTAATTGTTACCATGAAATTTTTGCTTGGGCCCCATATATTGGGCTATACAATGGATACG
AAAATATTTATTAATGCTACTGATAAACGCTTTCTATCAATGGTTTTCGTCTTTGTTCGG
GAGGTTTATAAGCATGTTGGTAAACACTTGCCAATCTCCAGTGTTCCGGATAACCGGTAG
Protein sequence:
MADKKKKIINTKDTLPRRPVILKSDRDASKDLIKGNQEKEKQPTIILKTREQSTPKEDRP
ISPKSQTIDADEQKCPVKEMSQPVKLLDENLEFNTAALEFLNDSNNNYLVVGVMGTQSVG
KSMILNLIARNKQHDDICHKILHSHELPANHSTETNELSMENQFENVSLTEATDLKEDDK
NPLKFKMQDIECIEKGVHCTKGIDMFVTNDRIILLDCQPLWSPSLIEETSTNPVTARSAN
IMTVDCLQIASYLMAVCHVLIVIQDWFVDYNFIRYIQTAEMLKPSLSASNNVNTSQEVET
SSGESHPHLLLLHNRCTLEDFTPESVMTMQSFYRKAFQRSNLQLSSGMYMYSDPNKNGIN
IDNVCKTYSITNCGHPINLFLLPEIYSDYDKKDIYRGHPSFEELANRLKWMVAGVNRHQI
TNVPNLSERGWFHFCNKAWETIRKCTFFMEYERFLLIKIKKKKQFLCGISTNKTTIRLDY
LIVTMKFLLGPHILGYTMDTKIFINATDKRFLSMVFVFVREVYKHVGKHLPISSVPDNR