| New model in OGS2.0 | DPOGS213227 |
|---|---|
| Genomic Position | scaffold636:- 16179-23631 |
| See gene structure | |
| CDS Length | 2010 |
| Paired RNAseq reads | 2780 |
| Single RNAseq reads | 6510 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002343 (0.0) |
| Best Drosophila hit | Trc8, isoform A (2e-180) |
| Best Human hit | E3 ubiquitin-protein ligase RNF139 (2e-102) |
| Best NR hit (blastp) | synoviolin, putative [Pediculus humanus corporis] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to Trc8 CG2304-PA, isoform A [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0008270 zinc ion binding GO:0045926 negative regulation of growth GO:0005783 endoplasmic reticulum GO:0007418 ventral midline development GO:0005515 protein binding |
| InterPro families | IPR001841 Zinc finger, RING-type IPR018957 Zinc finger, C3HC4 RING-type IPR013083 Zinc finger, RING/FYVE/PHD-type |
| Orthology group | MCL13537 |
Nucleotide sequence:
ATGTCTTTGAGGTCGAAAGCCCTTGCGCTGGTGGAGGTATTATTGCGGGTGCCCCCATTG
TTTGTGGTGGATGAGTTCCTGAAGATAAGCCTGGGGCTGCCGGTGTCCACTGGCGAGGAA
GTGTCGCTGTTGTCCAACGTGACTATTGACCACGTAGATATAACAGACGCAGACGGCAAT
TACTATGACTCCAACTTCTACAACACTTTCGTCTTCACACTCGTTAAATTCTTCGTATGT
TGTCTGGGATGTATGACAGCGCTGTGCATATTCGTGCTCTATACAAAACACCTCATCATA
GTCTACTTGTATCTAATGTCGCTAGGGATAGTGTTCGTGTCGTACTGGACAAACGTGTCC
GCCATCAAACAGATCCAGACTCTGATACAGACGGCGACCACTCCGCACTCGGCCAGTATA
CTGGAGGACATCCTGGACTTGAATCTAAAAAGACTGCTCGATCTCGAAGGTCCCGGTATA
CTGGTTATCCAGAACTTCGCCATACAGTTCATACTGTCGGTCCTGTTTAGAAATGTACAT
CTCGGGCCTCGACATCCGACTATCCAGAAGCTGTTGCCGTTAAGCTTCATGGCTCCGTCT
TTCCTGGCGATGCTGCCGGTGTCGCAGAATGTATTGCATCACTCCCCCGTGTTCTCGTCG
CTGTTGCCGTTGGTGCTGGTTCAGTACGCGATATGGGCGTCCAGCTATGACGTCATACAA
GTAATCTACGCCGGCTACCAGCACGGAAGACTGTTCGTCAGTCACAACGGCTTGTCCGCG
CTGGTGGAGACGGAATGGATGAGGCTGAACGTGCCCTGTGTGTTGAGAGTGTTCTGGGTG
ATGCGTGTCGCTGAGCACGCGATACTGCTGCTCATGGAGACCTACGATGACGAGGGTGAC
GAAGGCCTGAAGGTGTCAACGCTGCTGGCCGTACAGTCGCTCGCCTCCATGGCCAAGTCC
TTGTTAGTGACGGGTTGCGAAACCATAACGGCCGTCTTGGGCATGACTTCCGTGATATCG
TTCTTCTGCCACTACATCGGTAACTTCTTCCAATGGATACTGCTGACGGAGGAGGAGGAG
GATAAGAGTATAGGCACAGTGTCAGCTATACTGTTTTACATACTCGCCCTCCAGACGGGA
CTGACCTCTTTGAATCCGGAGAAGAGATTCATCCGTTTGTGCCGAAATTTCTGCTTACTA
TTCACGGCTCTGCTGCATTTCCTGCATAACATAGTGAATCCGATGCTGATGTCATTGAGT
GCGGCCCACAATCCGAGCACCCACAGGCACGTGCGAGCGCTGGGCGTGTGCGCTTTTCTC
ATAATCTTCCCGATATCGCTACTGGTGTACCTCTGGTCCCAGCACTCCATCTCCACCTGG
CTGCTCGCGGTCAGCGTGTTCAGCATAGAGGTCATCGTCAAAGTCATCGTCAGCCTGATG
ATATACTCGCTCTTCCTGTTCGACGCCTACAGGAGCACGTTCTGGGAGAAGCTGGACGAC
TACGTGTACTACATACGAGCGTTCGGCAACACCATAGAGTTCTGTTTCGGTATCTTCCTG
TTCTTCAACGGCGCCTGGATATTGCTGTTCGAGTCGGGCGGCGCCATCCGCGCGGTCATG
ATGTGCATACACGCGTACTTCAACATCTGGTGCGAGGCGAGGGCCGGCTGGTCGGTGTTC
ATGAAGCGGCGCACGGCCGTCAACAAGATAAACTCGCTGAAGGAGGCCTCCGCGGACCAG
CTCCACCGACTGGACGACGTCTGCGCGATCTGCTACCAGGAGATGCACTCGGCCAAGATA
ACGAGGTGCAACCACTTCTTCCACGGCGTCTGTCTCAGGAAGTGGCTATACGTCCAGGAC
AGGTGTCCGCTGTGCCACGACATCCTGTACAAGATAGACAACGACCCGAACAAGGACAAC
GGCTCGGAGGCAGCCAACGAGGAGAACAGCAACAACCAGAACCTGCTGCTCGAAGACGAA
CCCGACCTCCTGTTGAACGACGTGAGGTGA
Protein sequence:
MSLRSKALALVEVLLRVPPLFVVDEFLKISLGLPVSTGEEVSLLSNVTIDHVDITDADGN
YYDSNFYNTFVFTLVKFFVCCLGCMTALCIFVLYTKHLIIVYLYLMSLGIVFVSYWTNVS
AIKQIQTLIQTATTPHSASILEDILDLNLKRLLDLEGPGILVIQNFAIQFILSVLFRNVH
LGPRHPTIQKLLPLSFMAPSFLAMLPVSQNVLHHSPVFSSLLPLVLVQYAIWASSYDVIQ
VIYAGYQHGRLFVSHNGLSALVETEWMRLNVPCVLRVFWVMRVAEHAILLLMETYDDEGD
EGLKVSTLLAVQSLASMAKSLLVTGCETITAVLGMTSVISFFCHYIGNFFQWILLTEEEE
DKSIGTVSAILFYILALQTGLTSLNPEKRFIRLCRNFCLLFTALLHFLHNIVNPMLMSLS
AAHNPSTHRHVRALGVCAFLIIFPISLLVYLWSQHSISTWLLAVSVFSIEVIVKVIVSLM
IYSLFLFDAYRSTFWEKLDDYVYYIRAFGNTIEFCFGIFLFFNGAWILLFESGGAIRAVM
MCIHAYFNIWCEARAGWSVFMKRRTAVNKINSLKEASADQLHRLDDVCAICYQEMHSAKI
TRCNHFFHGVCLRKWLYVQDRCPLCHDILYKIDNDPNKDNGSEAANEENSNNQNLLLEDE
PDLLLNDVR