New model in OGS2.0 | DPOGS201184  |
---|---|
Genomic Position | scaffold353:- 59282-66363 |
See gene structure | |
CDS Length | 1512 |
Paired RNAseq reads   | 30 |
Single RNAseq reads   | 87 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA014231 (0.0) |
Best Drosophila hit   | serotonin transporter (0.0) |
Best Human hit | sodium-dependent serotonin transporter (3e-136) |
Best NR hit (blastp)   | high-affinity serotonin transporter [Manduca sexta] (0.0) |
Best NR hit (blastx)   | high-affinity serotonin transporter [Manduca sexta] (0.0) |
GeneOntology terms    | GO:0005886 plasma membrane GO:0005261 cation channel activity GO:0006837 serotonin transport GO:0015222 serotonin transmembrane transporter activity GO:0015844 monoamine transport GO:0008504 monoamine transmembrane transporter activity GO:0005887 integral to plasma membrane GO:0005328 neurotransmitter:sodium symporter activity GO:0051610 serotonin uptake GO:0043679 axon terminus GO:0030424 axon GO:0006911 phagocytosis, engulfment |
InterPro families   | IPR000175 Sodium:neurotransmitter symporter |
Orthology group | MCL10223 |
Nucleotide sequence:
ATGCTATTATTCGGTGGATTACCGCTGTTCTTCATGGAGCTGGCTCTGGGGCAGTTCCAC
AGATGCGGATGTTTAACACTTTGGAAGAGAATCTGCCCCGCGTTAAAAGGGGTAGGTTAC
GCCATATGCATGATCGATATCTACATGGGCATGTACTACAACACGATCATCGGCTGGGCG
GTTTACTACCTCGTGGCATCCCTGGCCTCCATCAACTCCGTGCTGCCCTGGACTAGTTGC
GACAACGAATGGAACACTCCTCTCTGCTCACCAGTTACATCCCCGCAGAACAATCCTAAT
GCTACCACGCCGGCTAAAGAATTCTTTGAACGTAACGTTTTGGAACAACAGCGATCCAAC
GGCCTGGATGATATGGGCCCTATAAAACCATCGCTTGCTCTTTGCGTCTTCGGTGTCTTC
GTATTGGTATACTTTTCTTTATGGAAAGGTGTAAGAAGTGCTGGCAAGGTGGTGTGGGTC
ACAGCATTAGCTCCGTACGTAGTGCTTCTGATATTGCTGGCAAGAGGGGTCACGCTTCCC
GGTGCTACTGAAGGCATTCGATACTATTTAACACCGGAGTGGCATAAGCTACAGAATACA
AAGGTGTGGGTGGATGCGGCCTCTCAAATATTCTTCTCTCTGGGTCCGGGCTTTGGCACA
CTTCTGGCTCTGTCCAGCTACAACAAGTTCAACAACAACTGCTACCGCGACGCTATCATC
ACCTCCTCAATCAACTGCCTCACTAGCTTTCTCGCTGGATTTGTTATATTCTCCGTTTTA
GGTTACATGGCACACGTTCAGAACAAGAGCATCGAGGAGGTAGGTCTCGAAGGTCCGGGG
CTAGTGTTCATCGTTTACCCGGAGGCCATCGCCACTATGACCGGTTCAGTCTTTTGGGCC
ATCATCTTCTTCCTCATGCTCATCACCCTCGGATTAGACAGCACTTTTGGAGGTCTGGAG
GCAGTCACCACAGCTCTATGTGACGAGTATCCCCGCGCACTCGGACGGCACCGGGAAGTG
TTCGTCGCCTTTTTGTTGCTCTTTATATACATCTGCGCTCTTCCTACCACAACATACGGC
GGGGTATACCTAGTGGATTTATTGAACGTGTATGGACCTGGTCTGGCGATCCTGTTTGTT
GTGTTCGCGGAGGCCGCTGGCGTGTGCTGGGTTTACGGTGTGGGGCGTTTCTCAGAGGAT
GTGAGGACAATGTTAGGACACAAACCTGGCTGGTTCTGGAGAACCTGCTGGTCTTACATC
AGCCCTGTGTTCCTGCTGGTGCTGTTTATCTTCTCGGTGCTATCGCACGAGGAGATGCTG
GGTGGAGAGTACGAGTACCCTCGCTGGTCGATCCGCGCCGGCTGGGCGATGACCGCCACC
ACCGTCTCCTGCATTCCAGTCTACATCATCTACAAGTTCATCATCACACCTGGCAGCTTC
CTCACTCGTATAAGGACAATGAAACGCCCAGTGGAATCACCAGTTCCAGTTCCAGCGCCC
AGTGGCCTGTGA
Protein sequence:
MLLFGGLPLFFMELALGQFHRCGCLTLWKRICPALKGVGYAICMIDIYMGMYYNTIIGWA
VYYLVASLASINSVLPWTSCDNEWNTPLCSPVTSPQNNPNATTPAKEFFERNVLEQQRSN
GLDDMGPIKPSLALCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLLILLARGVTLP
GATEGIRYYLTPEWHKLQNTKVWVDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDAII
TSSINCLTSFLAGFVIFSVLGYMAHVQNKSIEEVGLEGPGLVFIVYPEAIATMTGSVFWA
IIFFLMLITLGLDSTFGGLEAVTTALCDEYPRALGRHREVFVAFLLLFIYICALPTTTYG
GVYLVDLLNVYGPGLAILFVVFAEAAGVCWVYGVGRFSEDVRTMLGHKPGWFWRTCWSYI
SPVFLLVLFIFSVLSHEEMLGGEYEYPRWSIRAGWAMTATTVSCIPVYIIYKFIITPGSF
LTRIRTMKRPVESPVPVPAPSGL