New model in OGS2.0 | DPOGS201182  |
---|---|
Genomic Position | scaffold353:+ 45390-49205 |
See gene structure | |
CDS Length | 1680 |
Paired RNAseq reads   | 1431 |
Single RNAseq reads   | 3518 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA014271 (0.0) |
Best Drosophila hit   | helicase (5e-136) |
Best Human hit | probable ATP-dependent RNA helicase DDX56 (2e-117) |
Best NR hit (blastp)   | RNA helicase [Choristoneura fumiferana] (0.0) |
Best NR hit (blastx)   | RNA helicase [Choristoneura fumiferana] (0.0) |
GeneOntology terms    | GO:0004004 ATP-dependent RNA helicase activity GO:0005524 ATP binding GO:0003676 nucleic acid binding |
InterPro families    | IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR001650 Helicase, C-terminal IPR014001 DEAD-like helicase IPR014014 RNA helicase, DEAD-box type, Q motif |
Orthology group | MCL12595 |
Nucleotide sequence:
ATGAGTGAAGACAAAAAGGTTATGTTCCATGAAATGGAACTGGATGATCGATTATTAAAG
GCTATATCTCAGTTGGGATGGCCTCACCCGACACTGATACAAGAAACGGCTATCCCATTG
TTATTAGAGGGCAAAGATGTACTCATGAGAGCCAGGACGGGATCAGGCAAGACAGCAGCT
TTCACAATACCTGTCATACAAAAGATTTTGAATCTTAAAAATACCAGTGCACACCAATGT
ATAAGAGCCCTTATATTATCTCCAAGTAAGGAGCTGTGCGGACAGATAACTTCTGTGGTT
GGTCATTTAACACTGAAATGTGCAAGAGAAGTCCGTTGTATAGACATTTCCTCCAACGGT
GACATGCAGATACAGAAGTCTTTACTGGCTGACAAGCCTGATATAGTAGTGTCCACACCA
TCACGAGTATTGGCCCACTTGAAGGCTAATAATGTAAGGTTGAAGGAGGATATAGCCATG
TTGGTTGTGGATGAAGCCGATTTGGTATTCTCATTTGGTTATGAAAACGAAATTAAGGAA
CTTCTTGAACATTTGCCGAAGATATATCAAGCTGTTCTAGCCTCAGCTACACTTTCCGAC
GATGTTTTAAGTCTGAAAAAGATAGTCCTCAGAAATCCGGTGACATTAAAGCTCGAAGAA
CCAGAGCTGGCACCGTCTACACAATTACAGCATTATCATTTGTTTGCCGAAGAAGATGAT
AAAGCGGCCATACTCTATGCATTGCTGAAATTAAATCTCATCAGAGGAAAGACCATCATA
TTTGTTAGGACGGTTGACCGATGTTACAAATTGAAGTTATACTTGGAGCAGTTTAAAATC
GGCTCATGTGTACTGAATTCTGAGTTGCCGGCGGCTGTGCGGTGTATGTCTGTGGAGCAG
TTTAACAGAGGTCGGTACCAGATTATCGTGGCCTCTGACGAGAAGGCTTTGGAGGAACCG
GACGGGGGCATGATGCTGGAGGAGACGGGCAAGAAGAAGCAAAAATCAAAACGTAGGAAA
GACAAGGAGTCGGGCGTGTCCCGGGGCATCGATTTCCAGCATGTGTCTAACGTTATAAAC
TTCGACTTCCCCCTGGATGTGACGGCCTACGTGCATCGCGCGGGCCGGACGGCTAGAGGG
ACTAGTCAGGGCTCCGTGCTGTCGTTTGTGTCCATCAGAGAGAAACCGCTCATGAATGCT
GTGAAAGAACATCTAACTAAATGTTTCAATGGGCAGAAAGTTTTACAGAAGTATTCTTTC
GCGTTGGACGAGGTGGAGGGTTTCCGGTACCGGTCACGGGACGCGTGGCGCGCCGTCACA
CGGGTGGCCGTCAGGGAGGCGAGGCTGAGCGAGATCAGGAGGGAGCTGCTCAACTGCAAG
AGACTACAGGGCTACTTCGAGGAGAACCCCACAGACCTGGCCGCCTTGAAGCGCGATAAG
GCCCTTCACACCGTGCGCCTGCAGCCGCAGCTGGCTCACGTGCCGGAGTACCTCCTGCCG
GCCGCGCTCCGGACGGACGGCCCCGAGCCCGAGCCGGCGGCGCCGGACGCGCCCCCCGCC
AAGAAAAAGAAGCAGCAGAACTTCGGCAGCGTGAAGAGACATAAGTACCAAGCCCGGCAG
CGAGATCCCCTCAAGAGCTTCGCGGTGAAGGCTGCCAGCGCGTCGCCGTCCAAGACCTAG
Protein sequence:
MSEDKKVMFHEMELDDRLLKAISQLGWPHPTLIQETAIPLLLEGKDVLMRARTGSGKTAA
FTIPVIQKILNLKNTSAHQCIRALILSPSKELCGQITSVVGHLTLKCAREVRCIDISSNG
DMQIQKSLLADKPDIVVSTPSRVLAHLKANNVRLKEDIAMLVVDEADLVFSFGYENEIKE
LLEHLPKIYQAVLASATLSDDVLSLKKIVLRNPVTLKLEEPELAPSTQLQHYHLFAEEDD
KAAILYALLKLNLIRGKTIIFVRTVDRCYKLKLYLEQFKIGSCVLNSELPAAVRCMSVEQ
FNRGRYQIIVASDEKALEEPDGGMMLEETGKKKQKSKRRKDKESGVSRGIDFQHVSNVIN
FDFPLDVTAYVHRAGRTARGTSQGSVLSFVSIREKPLMNAVKEHLTKCFNGQKVLQKYSF
ALDEVEGFRYRSRDAWRAVTRVAVREARLSEIRRELLNCKRLQGYFEENPTDLAALKRDK
ALHTVRLQPQLAHVPEYLLPAALRTDGPEPEPAAPDAPPAKKKKQQNFGSVKRHKYQARQ
RDPLKSFAVKAASASPSKT