New model in OGS2.0 | DPOGS204068  |
---|---|
Genomic Position | scaffold308:- 45743-51468 |
See gene structure | |
CDS Length | 4548 |
Paired RNAseq reads   | 823 |
Single RNAseq reads   | 2093 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010808 (2e-69) |
Best Drosophila hit   | spargel, isoform B (9e-28) |
Best Human hit | peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (5e-16) |
Best NR hit (blastp)   | PREDICTED: similar to CG9809-PA, isoform A [Apis mellifera] (4e-30) |
Best NR hit (blastx)   | GK13755 [Drosophila willistoni] (8e-28) |
GeneOntology terms    | GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0003676 nucleic acid binding |
InterPro families    | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
Orthology group | MCL17504 |
Nucleotide sequence:
ATGGAGTCGCATATTTTGAATATGTATCACCAGGCCCCATATAGGAATATTGGTCATAAC
ATACTCCGTTCGATAAGCGAGTCGTTATCATCCGAGGGCAGTTGTAACCAGAACAGCCCG
GAACAGCAGGCTGATGAGAACGAAGTGTATTGGACAAGAAATACTCAGGTTTGGAGTCAA
AATCAGAATGTAAATATAACACAGTCGAATCAAGATATAAGTGTAGATGTTGATGAAAAT
ATTGAAGTACAGGAAGTGTCTATAGATGATAGGAACTCTGAAACCGATGGTCAGTTGGAC
ACTGATAATATGGAGGAAAATTCGCTAGTGGAAGGTGATGATTATGATATCATCCAAAAG
AAGATAATACATCAGATGAAGGGGAATACATCGATCCTGAAGATAAGATCCGATACGGAA
CCTAGTGTATCCCAAGACAGTCTAGAATTAAATTTCGATGCACCAGTCGTTTCAAATGTC
GATGAATATTTTATAAAACAAAATGATGAGAAGCATATATTAGAGGTGAAAGACGAGCCG
GTGGTCAAAGATGTGGATGAGTATTTCATCAAGGACACTAAAGATATGCCAACGATTCCA
CCACCGACAATCGTTGAGGAACTCCTAGTTAAAAGCAAATTACCTGAGACAGATTTCCGG
ATATCCAAAACTGTACCAGACGAGATATTCGAGTCCGAGCCGACCGTTGATGTTAAAGAA
ATAGAAACAGTCGAGCAACAAGAAGATTCAGTGGCAGATGTCTCCATCAACGAATCAGAT
TTAGAAGTGCTTCCTAATATAGAAGATCTAAAGCGATATCTCTTGGACGATTTGCCTTAC
ACTAAACTGAAGAACGTACAGAAGTCTTACTCCGTCTCTCTACCACATTCGCCGATGCAC
AATATTTTGGATATAGATTCTAAAACGTGTTTAAGTTTCGAGGATCTTAATTTAGATCTA
TCTGATCTCACTTTCGAGAATGAGAAAGAGAAATCGAGTGCGAGCTTAAGGAGTGATGAT
ATGCCACGGACGTTGACGGAGGAAGACGTGAACAGCTTTCTGATAACGAATCAAACAGAG
TCCAAGGAAGTTGTGACCGTCGATGACTGTTGCCCCCAAGATATGGAAATCGATAGACCT
CTGGGTGCTATTATCAGCAACGGAGACGTTCAAACCGTCATACTACCAGACAGAAAATGC
ACATCAACGCCCATCCCAAAACCCAATGTACTAGAGTTCTGCATAGAGAAGGTCGCTGTG
AAAAAAGAACCAGATATAAAAGTCGAAACAGATGATTTTGTGGACGTCGAATCGTGCAAC
GACGCTGTCATACCCGTCCTGGAAGCGAATAATCTTAACTCCCTCCTAGAACAGTTTGAG
GCAACCGAAAAATTGAACAAACGAAGAAAACTATCAGTGAATGTGAGTGATTCTAAAACA
AAGACAATAAGCATAACTAGTGGCATGAGACTGCAAGACGCTGGTGTACAATTGAACAAG
ACGAAGATGCGACAAATATTGATGCCGTCGCCCCTTAACACTGTTATGAGACGTTCTCCA
AGTCCGATCCACTCTGATCACGATTATTGTTCGTCCAAGAAACGGCTCAGCCTCCCGAAT
CTTAAGGGCGGTCAGAGTCTTCTCAAACCCGAGGTCCTGTCCAGCAATAATAAAATACTC
AGCTCGAGACATAGGTCGTGTAAAAATAAAAAAGTTGTCTACCACCTCAGCAGCGACGAC
GAAAGCGATGCTAATACAGCAAAGAAAAATAAAATTCTAAATAATAATCGTGTAGCTGAT
GATGTTTTTGTTAAGAATAATAAAAAATCTAATATAAAACTAACTGTTAAGGCAGCGGCG
AATTCGAATCATCGTAAGAAACAGTCGCCACCGCGTAGTGTGAATGATTGTGATGTTAAC
AAAGATAACGGCTCTGTGATGGTGAAAAATGCTTTTAAAGCAAGTGATACTTCTTGTAGT
CAAAATTGTAACGGTAGCATTAAGTTAACGATAAAAAATAAATCCGAGGTTATTATCAAG
AACTGTGATTTTAAGGACAATCGTAAGGACAACGTTGATAAAAATAAATTTGTAGGTGTA
AGTGCTAATAGATTTTTGAACGATATAAATAATTCTAATAAAGGCATAGATACTTTAGAT
AGGAACAAAACGAAAGACTTAAATAGGGTAGAGAAACATTTTAATGTAATCGCAAAACAA
GAAGTCAATTCTAAAGAACATTTCTACACTGCGCTGTTTAATGATAAACAGGATATTGAG
CTTCCGCAAATAAAAGCCGAGAATAACGTCAAAGATGAGCAAACACAGGCCGAGAGCTTA
AATGATTTGGAACAACCACAAAAGAAGAAAAAGCTGAATCTCCAAGAGTACAAATTAAGG
CGAAATGTTAGTTCAAATGCTAGCTCAGCTCAAGTTAGCCCCGAAGCTATATTTCCCGAT
ATCCCATGCAACATAAATCTTGATAAGAATTTAAGGGCAGTAAACAATCAAACAGCCAGT
GACGTTGTTTCGGCACCAAAAGAGCCTTTAATTTCAGAAGCCCCAAAAACAATCTTCGAT
CCCATAAGAGAAGCTTCTAGAAAAATACTCATGAATTCCAAAAAGCAAAAGGCTGAAGCT
ATGAGGAAAAGAGATGAAGATATTGTTATGAGCAAAATACCTAAAGTGGAAAACTTAGAA
CTACAGCCCCTTATAAGTGATGCGGAAATGATGAAAATTGTTGGCATGACACCTAAGATA
CTCCCTGTGCCTATTGTACCGCCAACACAAACAGTCGTAGAAGATAAAGTTCAACTAAAA
GATCATGACGAAATTGTACTTGTTAGCATCGGTACAAACACTGATGAGAATATGTTCAAA
CAGATAGACAAGGTTATTGAGAGCAAAAAACGGAAGTCCTCATCGCCCAAACACGAAAAC
AAAATGACGATCAACTTTAAGATCAAAAAATCTGATCCCGTGCTGAAACAAAACGTATTC
GATACAGTTAAACGAAGCAAAAGTCCCATCAATGAGAAAAATCATTCGGAGGTTAAAATC
GATAAAGAGAGGCTCAAAGATATTACAGCGACGTTAAAGAGTGTAGAAAAACAAGTGGAC
ACGAAGATTTCTAGCAATTCTCTATTTGCTAGTATCCAAGACGTTGTGATGAAGAATGCT
CCAACTGCTGATATTACTAAAGCTGAAAAGTCCCCGAAACATAGCTCAGTCGAAAAACGT
GATGCACACCATAAATATAAAACGAGCATAGTGCGACAATACGACAATAGTGATGACCAT
GGCGAGGACAAAATAATCCTGCATTTAGAGAAGAATCGTAAAAAACCTGATCAAGCTAAT
GTCGAAGTTCAGACTGATTCTCCCTCTGAATCTGTCGTAATAAAAGATAAAGCAGATTTA
AAAGAGAGCAGCCCTTCAACAAGGAAACGAAATGACAGTGACATGTCTATGTCGAGTGAC
GGTAGTCCTGTTCGTACAAAAAAACAGCACGTGCTGGCAACTAAAGACGAAAAATTATCT
CCAACTAAACCAAGACAAGATAGACGCGATGTTCCAAGATCGCAGTCAAAAGAAAAGAGA
TGCAGGTCCACAGACCGTTATGACGTCAAATACCGACGTTCAAGATCACACTCACGGGGC
CACAGAAGGAAAAGGTCTCATAGCCGCAACAGGTCGCGATCTCGGGGACGTTTCAGAAGA
TATAGAAGATCAGACTCCCCGTATAGAAGGAAAAGAAGATCGCGGACGAGATCGCCGTAT
CGATCAACAAGACGCTCTCCGTCCGTGCGAAAGGATTACCGCTCGACTCGCACCCGATCG
AGGTCGAAACACGCAGAGAAGAAATCGAAAAGCCCAATGCCGAAAAAACGGATCAGTCCA
CAGAGAGCCAACGCTGAGAAGCCGTCCAGGTCCCTAACACCTCCACCAAGAAAACCGACC
GTCTCAGAAAGCTCTGATTCCTCGACGTCTTCCAGTTCGACTTCATCGGGCGCTTCCTCG
GCGTCGATCAAGTCGAGATATTCTTGCAGTCCGTACAAAAAAGATGAGAATTTCAGGAAA
AACTACAGAAACTCATTTAGTTCTGAAGACAGAGAAAGCAATACTCCAGTAGAGGAGAGG
CGGATCGTTTTCGTCGGCAGATTAGAGAAAGATCTGACGAAGGCGGCTCTGAGGGCTCAG
TTCACCAAGTTTGGGCCGGTCACTGAAGTCAGGCTGCACTCCAAGGAAGACGGTTCTCGT
TACGGTTTCGTAACGTTCCAACGACCTCGCGACGCGTGGTCCGCGGTAGAGGCCGCTTCT
TCTTTCCCTCAATACGACGTGGGCTTCGGCGGCAGACGAGCGTTCTGCAGGCAGAGCTAC
GCTGACCTTGATGGTCTAGAGGCGAAGTACACGGAAAGCGCTTTCCACGGCCAGGCCGCG
ATGCCGGTCCGCCGGAACGAGGACATGTCGTTCGAGCAAATGTTGTTAGATATAAAAAAG
AAATTAAATAAAAGGAAAGGCGACAAAGCCCGCCAAGACGATGCTTGA
Protein sequence:
MESHILNMYHQAPYRNIGHNILRSISESLSSEGSCNQNSPEQQADENEVYWTRNTQVWSQ
NQNVNITQSNQDISVDVDENIEVQEVSIDDRNSETDGQLDTDNMEENSLVEGDDYDIIQK
KIIHQMKGNTSILKIRSDTEPSVSQDSLELNFDAPVVSNVDEYFIKQNDEKHILEVKDEP
VVKDVDEYFIKDTKDMPTIPPPTIVEELLVKSKLPETDFRISKTVPDEIFESEPTVDVKE
IETVEQQEDSVADVSINESDLEVLPNIEDLKRYLLDDLPYTKLKNVQKSYSVSLPHSPMH
NILDIDSKTCLSFEDLNLDLSDLTFENEKEKSSASLRSDDMPRTLTEEDVNSFLITNQTE
SKEVVTVDDCCPQDMEIDRPLGAIISNGDVQTVILPDRKCTSTPIPKPNVLEFCIEKVAV
KKEPDIKVETDDFVDVESCNDAVIPVLEANNLNSLLEQFEATEKLNKRRKLSVNVSDSKT
KTISITSGMRLQDAGVQLNKTKMRQILMPSPLNTVMRRSPSPIHSDHDYCSSKKRLSLPN
LKGGQSLLKPEVLSSNNKILSSRHRSCKNKKVVYHLSSDDESDANTAKKNKILNNNRVAD
DVFVKNNKKSNIKLTVKAAANSNHRKKQSPPRSVNDCDVNKDNGSVMVKNAFKASDTSCS
QNCNGSIKLTIKNKSEVIIKNCDFKDNRKDNVDKNKFVGVSANRFLNDINNSNKGIDTLD
RNKTKDLNRVEKHFNVIAKQEVNSKEHFYTALFNDKQDIELPQIKAENNVKDEQTQAESL
NDLEQPQKKKKLNLQEYKLRRNVSSNASSAQVSPEAIFPDIPCNINLDKNLRAVNNQTAS
DVVSAPKEPLISEAPKTIFDPIREASRKILMNSKKQKAEAMRKRDEDIVMSKIPKVENLE
LQPLISDAEMMKIVGMTPKILPVPIVPPTQTVVEDKVQLKDHDEIVLVSIGTNTDENMFK
QIDKVIESKKRKSSSPKHENKMTINFKIKKSDPVLKQNVFDTVKRSKSPINEKNHSEVKI
DKERLKDITATLKSVEKQVDTKISSNSLFASIQDVVMKNAPTADITKAEKSPKHSSVEKR
DAHHKYKTSIVRQYDNSDDHGEDKIILHLEKNRKKPDQANVEVQTDSPSESVVIKDKADL
KESSPSTRKRNDSDMSMSSDGSPVRTKKQHVLATKDEKLSPTKPRQDRRDVPRSQSKEKR
CRSTDRYDVKYRRSRSHSRGHRRKRSHSRNRSRSRGRFRRYRRSDSPYRRKRRSRTRSPY
RSTRRSPSVRKDYRSTRTRSRSKHAEKKSKSPMPKKRISPQRANAEKPSRSLTPPPRKPT
VSESSDSSTSSSSTSSGASSASIKSRYSCSPYKKDENFRKNYRNSFSSEDRESNTPVEER
RIVFVGRLEKDLTKAALRAQFTKFGPVTEVRLHSKEDGSRYGFVTFQRPRDAWSAVEAAS
SFPQYDVGFGGRRAFCRQSYADLDGLEAKYTESAFHGQAAMPVRRNEDMSFEQMLLDIKK
KLNKRKGDKARQDDA