| New model in OGS2.0 | DPOGS204933 |
|---|---|
| Genomic Position | scaffold1239:+ 17882-28628 |
| See gene structure | |
| CDS Length | 2850 |
| Paired RNAseq reads | 1151 |
| Single RNAseq reads | 4507 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005275 (3e-13) |
| Best Drosophila hit | CG8232 (1e-107) |
| Best Human hit | PAB-dependent poly(A)-specific ribonuclease subunit 2 isoform 2 (2e-47) |
| Best NR hit (blastp) | GF12217 [Drosophila ananassae] (1e-154) |
| Best NR hit (blastx) | GF12217 [Drosophila ananassae] (1e-117) |
| GeneOntology terms | GO:0004535 poly(A)-specific ribonuclease activity GO:0006511 ubiquitin-dependent protein catabolic process GO:0004221 ubiquitin thiolesterase activity GO:0003676 nucleic acid binding GO:0005622 intracellular GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening |
| InterPro families | IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 |
| Orthology group | MCL12888 |
Nucleotide sequence:
ATGGCGTTTCACTATTCGGATGGTAACGTTTCTTCCGAACATCTTATGAATGATCATTAT
CAACCAGATTATTCCCAACCATATGTCTTGCAAAGTCAAGAGGCAGAATATGAGTTGCGT
AGCAATGTGCTTGTTGACGGTGGAGATAGATTCGGTGTATCAGCTGCTGTCTTTGATAAG
TATGAGGAGTTGATATGGATGGGAAACCAAGGTGGCCATGTAACATCATATTATGGGCCA
ACTATGCAAAAGTATACTTCCTTCCAAGTTCATGCGACTGAAGAAATACGAGACATACTG
ACAGTTGACAAAGGCATCTACTTGCTTACAAAATCTATTCTACGTCATCAAATACGCAGA
GGAATACCAAAATTTACTCATAATACTGAAATATTTTTGGTTTTAGAACAAAAACATATT
TACGCGGACTTGAAAAACATAACCGGCCAGGAATACCGAATTTTAAGAATGCAAATAATT
TTATCTTGCGAAAAGATATTAAAAAGAAACTTACTGGCCTGGGAACAGGAGGCACTTCTT
TATCCTAGAATCTGCGCAGACGTTTGCTGTAGGGAATGGCGGCAAGAGAAGCTTACTGAC
TGTGTGAATTGTGGACAGGTTTCATACTGTTCTGACCATCCGGAACATTTGCCTTCATCT
CATCAACGTTGGTGCAAATCGTATGCTCTGTATCAAAAATTGGTTTTGCACCATCAGACC
TTTGGTAAATTGATGCCAAAGTTGCCGAAGAAACTGTTCGAAAATTGGCAAATTCCAGAT
AACATGAACGAAGTTGACACTCAGAACTCCTTGTGCAGTGTGATGGATGTGTCTTCCACG
AGTCAGGCTATGGTGTTTGGAGATCAGGCCGGTCGTTTGCATCTTTTCTCTCCTCAACAC
AATAACGAACCCGTCTTCAATAACTTTTCCAGAGCCACCGAGTTCGCTGACCCTCCTCCC
AACCTGCCGTACGCCAGTTTTGAAGACAACTCTTTCTCGTACTCGTCAGTTCCGCTGCCG
CCGCTCGCCTCCGGCTCCAAATGGTTCAATGAACTGCCACCCGAATTCTTCACGAACGTA
TACAGAAAGCCTAAGCCGATTGATCAAGAAGTATTACGAACAATGAAGATGCAGGGTCCG
ATAGGTTACGCGCCTAATCCAAGGACGCACAGACGTAATCAGATGCCATACATAGAAGAA
GATTTGGAAGACATCGAAAATCCAGGAGTAGATCGTCGTAACCCGCAGCAACCAATACCC
AGATATTATTTGAAGAGACGAAACCTCTCAGCATTCCATGGATCCACCGTGCGGGTACGG
GTCCATCGCGTTGCAGGGGAAGAGCTTCAACAGTGCCTGGGACTTGCGACCCAGACGGAG
TTACGTTTCGATCGAAATGGAGAAAATTGCGAACAAGAAAATATTAACGAAACTGGTCTG
CCGGGCATACAGAGCACTGTGCCCAATTCATATTGCAATCCAATGTTACAGGTTTTATAT
TACATACCGCCGTTAAAAGCCACATTATTGGCTCACACTTGCGCCAAGGAGTTCTGTCTC
AGCTGCGAATTAGGTTTTCTATTCCGTGCCCTGGACTCGTCCGGGGGCGCCGCGTGTCGC
GCTACTAACTTCCTCCGAGCGTTCAGAACGGTGCCGGAGGCTGCGGCGCTCGGACTCATC
CTGCCTGAACGCACCACGCCCAGGATAGATGTCGCCACCCTCGTTCAGAGTTGGAACCGT
TTCATCTTACATCAAATGCACGCGGAGATACTGGAAACGCGGAGGAAGGAAAAGGAACTG
GCGTATCTGACGCAGAGGATAAGATTAGTGAGACCCGGCAACAAGGCGGTGCAGAAGCTG
TTGAACGGAGAAATAGACGAGTTCGAGTTGGACATGCAGTTCCTGGACCCCACGTTGGCT
GAGAAGAAAGACTACGACGAGAACTGGCACAATGACACCACATTTCTGAACCGTCCGCCT
CAAGCGGAGTGTGAGGAGCTGTTAGAAGCTCCACAGACGCCCGACATAGAGGAACCCCCA
CCTCCGATAGAGGACTCGGAGATATCACAACTGTTTGCGATCGCGAGGCAACAGATTAAC
CGATGCATGAAATGCAACAAGGAGGAAGAACGCGATACAGTAGTATTGGCATGCGCTCTG
CAGTATAGCGCGGGGGTGGGGTTTTTAGAGCTAGTGAGCGCTTCGCTTGCCTCCCGGCGC
GCCACGCCCGCCTGGTGTGAGACCTGCGCGCGGTTCACACCCACCACGCAGGTCGCTAGG
ATACTCAGATTGCCACCCATACTCGCAATTAACTGTGGCGGAATGACAGCACAGGAAAAA
GCATTCTGGTCGAGAGGTGGACAAAAACCAACGCCAGAAGTTATTAAAAGAGGGGGCAGT
GGGAAGCCTTGTAGGTACGGGCTACACTGTGCAAGACCTGGCTGTAGATTTAAACATCCG
GAGAGCAGACCGTCCGCGACCCCTCAGAGCAACGCTCAAGATAATGGCTGTATACTCCCA
CATCACCTGAACATTAGACTGCAACCGGACGGTGAAGTGGTCATAACAGATAAGGCCAAC
GCCACCACTGACTTGAAGTCCGACTTCAAGCGCCGTTACCAGTGTGAGAACTACAGTCTT
CATGCCGCGGTGGTGTGCGTGGAGGACAATCCGAGGAATTTGGTTGCCTACGTTAAGATA
CCGGATGAGAAAGGAGATCAGAGGTGGTACCTGTTCAATGATTTGAATATAGTCCAAGTA
AGTCCGGAGGAGGTAGTATCATTTAGTTGCTGGTGGAAGTGGCCTTGTGTTTTGTTCTAC
AGCACACAGAGGGCTGTTGGGACCTCATAG
Protein sequence:
MAFHYSDGNVSSEHLMNDHYQPDYSQPYVLQSQEAEYELRSNVLVDGGDRFGVSAAVFDK
YEELIWMGNQGGHVTSYYGPTMQKYTSFQVHATEEIRDILTVDKGIYLLTKSILRHQIRR
GIPKFTHNTEIFLVLEQKHIYADLKNITGQEYRILRMQIILSCEKILKRNLLAWEQEALL
YPRICADVCCREWRQEKLTDCVNCGQVSYCSDHPEHLPSSHQRWCKSYALYQKLVLHHQT
FGKLMPKLPKKLFENWQIPDNMNEVDTQNSLCSVMDVSSTSQAMVFGDQAGRLHLFSPQH
NNEPVFNNFSRATEFADPPPNLPYASFEDNSFSYSSVPLPPLASGSKWFNELPPEFFTNV
YRKPKPIDQEVLRTMKMQGPIGYAPNPRTHRRNQMPYIEEDLEDIENPGVDRRNPQQPIP
RYYLKRRNLSAFHGSTVRVRVHRVAGEELQQCLGLATQTELRFDRNGENCEQENINETGL
PGIQSTVPNSYCNPMLQVLYYIPPLKATLLAHTCAKEFCLSCELGFLFRALDSSGGAACR
ATNFLRAFRTVPEAAALGLILPERTTPRIDVATLVQSWNRFILHQMHAEILETRRKEKEL
AYLTQRIRLVRPGNKAVQKLLNGEIDEFELDMQFLDPTLAEKKDYDENWHNDTTFLNRPP
QAECEELLEAPQTPDIEEPPPPIEDSEISQLFAIARQQINRCMKCNKEEERDTVVLACAL
QYSAGVGFLELVSASLASRRATPAWCETCARFTPTTQVARILRLPPILAINCGGMTAQEK
AFWSRGGQKPTPEVIKRGGSGKPCRYGLHCARPGCRFKHPESRPSATPQSNAQDNGCILP
HHLNIRLQPDGEVVITDKANATTDLKSDFKRRYQCENYSLHAAVVCVEDNPRNLVAYVKI
PDEKGDQRWYLFNDLNIVQVSPEEVVSFSCWWKWPCVLFYSTQRAVGTS