| New model in OGS2.0 | DPOGS214916 |
|---|---|
| Genomic Position | scaffold2360:+ 10299-15506 |
| See gene structure | |
| CDS Length | 1785 |
| Paired RNAseq reads | 273 |
| Single RNAseq reads | 958 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA014005 (3e-89) |
| Best Drosophila hit | NtR (5e-20) |
| Best Human hit | ND |
| Best NR hit (blastp) | PREDICTED: similar to NtR CG6698-PA [Tribolium castaneum] (1e-40) |
| Best NR hit (blastx) | PREDICTED: similar to NtR CG6698-PA [Tribolium castaneum] (9e-39) |
| GeneOntology terms | GO:0005231 excitatory extracellular ligand-gated ion channel activity GO:0016021 integral to membrane GO:0006811 ion transport GO:0005230 extracellular ligand-gated ion channel activity |
| InterPro families | IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR022041 Farnesoic acid 0-methyl transferase |
| Orthology group | MCL18866 |
Nucleotide sequence:
ATGTGGTTGTTAATTTACTTTATTGGGATTTTGGGTTCCGCTGTCGGAAACTTCACATTC
ACATATGATATGGCGATGCAGTGCAAGGAGCACTTATGTCAACACGGCTACAACTATGAG
ACATACTACCTGGTTGAATCAGATCAAAGGAAGATTGTAAGATCGGATCCCAGTATAACC
TTCGAAATGCACATCGCTATACTAGCAGCTAGCAATGGCCATATACTTCTATCAACTGTT
TCACAACCAGACGCAGCCGATCCAGTCTATGAAATTGGTGGAGGTAATAAATTCACGGAG
CTGAGAGGAAATTTGAAAAGGAATGCAAAAGCGTCTGCGAAGACTGTTGGCATTTTATCC
ACAATTGAGTTCAGGGCGTTTTATATTAAAATAACTGAAGATGGTCTCATTGAATTTGGT
CGCGAAGGTGATATATTACCTATCTTAAGCTATCAGGACATGGATCCCATAAACATACAT
TATTTTAGTTTCGCAGCCTGGAACGGCGTGGAAGCGAAATTCCTCTATGATTGTCCCATA
CCCTTGAAGAATGCTACAGAAGTTCCGTCATCTGATTCTGTAATGGTAGAACCGAAAATG
TCAAATTCCGATATCCTTAAAAGATCACTGCTTTTAAATAGGGATCCAAATATAGCACCC
AGATCTAAAGTTACTGTTCAGTTGGGAGTAAAAATTACAAGTATAACGTATGATCCCTTT
GAAACCAAATTGCGAACGGGTTTATCAGTGGTTAGGAAATGGACCGACGATAGCATGGCG
TGGAATCCTCTAAAATTTAATGGAACAAGCCGCCTAACGTTCCGCCAAGGACAAATTTGG
AGCCCCAGTCTATCTATTTACAATTCCGACACTATTGGATTTTTGGATGCCAAAAACTCC
GAACCGATAACCATGTTTGAAAGTGGTGAAACGATATTGCATATGCAGACTACCATACAA
ACTTGGTGTCTTGATTATTCTGACATGTTGACAAAATGGCCCCACGATGAATACGATTGC
GTCATTGTGATTGAACCTTGGGAAAATCATGAGGATATAACATTTAAGAAACTAGACCCT
GAAGACATGAAAGCTTTTGCAGATATCGATGACGTGATACAAAATTCTTGGGATATAACA
ACGGAACAATACATACTGAATTCAACATCATGGAATAGCAATTCAAGTGAAAGTGATAGA
TTCGTTATAGAAGTAGTTTTAAAAAGACGAGCAACTGCTTTCAATATTGTTTTCTATACG
CCTTTATTGGTTCTCATGACATTTATTCTTCTATCGTTCTGGACTGAGCCGTTGAATTTA
AGACGAATCTGGTTCTACGCCGGTTGCTCTGTTGTAATATGTTCAGGACTGTGTTACATT
GACTTTTTAGTACCCTGCCACAGTATTCCTTCAATATTGGTTCTCTACACAGTGGTTTTG
GGTGGAGTGCTTCTTGCTTTGTTAATCCATGCGGCGTTAATGACGTCACTGACAAAGCGT
CTGTGCAAGACGATTACCATTCAAAATATTTTAACAGCCCAGTGGTTTAGAACTCTGTTT
TTCCTTCCACCGTTTAAGACTAGCCATATATATGAGACTATAAACAATGACTATGGAGAA
AGTAATGAAGATGTAATGGAAACTTCTGGAATTAGAAATATAGAAGCAATGCAGAGTGAT
AATAAAGAGGACAACGAATCTGTAGAATTAGCAGAAGCAGTCGATAAAGTTCTGTTTCTT
ATTTACAGCATGACTTTTGCTGTTATGCTTGCTTTACATTTTTAA
Protein sequence:
MWLLIYFIGILGSAVGNFTFTYDMAMQCKEHLCQHGYNYETYYLVESDQRKIVRSDPSIT
FEMHIAILAASNGHILLSTVSQPDAADPVYEIGGGNKFTELRGNLKRNAKASAKTVGILS
TIEFRAFYIKITEDGLIEFGREGDILPILSYQDMDPINIHYFSFAAWNGVEAKFLYDCPI
PLKNATEVPSSDSVMVEPKMSNSDILKRSLLLNRDPNIAPRSKVTVQLGVKITSITYDPF
ETKLRTGLSVVRKWTDDSMAWNPLKFNGTSRLTFRQGQIWSPSLSIYNSDTIGFLDAKNS
EPITMFESGETILHMQTTIQTWCLDYSDMLTKWPHDEYDCVIVIEPWENHEDITFKKLDP
EDMKAFADIDDVIQNSWDITTEQYILNSTSWNSNSSESDRFVIEVVLKRRATAFNIVFYT
PLLVLMTFILLSFWTEPLNLRRIWFYAGCSVVICSGLCYIDFLVPCHSIPSILVLYTVVL
GGVLLALLIHAALMTSLTKRLCKTITIQNILTAQWFRTLFFLPPFKTSHIYETINNDYGE
SNEDVMETSGIRNIEAMQSDNKEDNESVELAEAVDKVLFLIYSMTFAVMLALHF