| New model in OGS2.0 | DPOGS207216 |
|---|---|
| Genomic Position | scaffold5454:- 146-7589 |
| See gene structure | |
| CDS Length | 2265 |
| Paired RNAseq reads | 2321 |
| Single RNAseq reads | 5996 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010711 (0.0) |
| Best Drosophila hit | polybromo (3e-178) |
| Best Human hit | protein polybromo-1 isoform 4 (9e-118) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC000618 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC000618 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0003677 DNA binding GO:0008270 zinc ion binding GO:0005634 nucleus GO:0007305 vitelline membrane formation in chorion-containing eggshell GO:0007306 eggshell chorion assembly |
| InterPro families | IPR001487 Bromodomain IPR000910 High mobility group, HMG1/HMG2 IPR001025 Bromo adjacent homology (BAH) domain IPR009071 High mobility group, superfamily |
| Orthology group | MCL14295 |
Nucleotide sequence:
ATGTTCGACAACGCCTGCAAATACAACGAGCCCGACTCGCAGATATACAAGGACGCGCTC
ATCCTGCAGAGAGTGTGTTTGCAGACCAAGCAGTTGCTGAGGGAAGACGAGGATGCTGTA
CCGGATGTAGCCGGTGCTGTTCAGGATCTGTTGTTGACTCTCTTCACAGGAGTCTACAAC
CACCAAGACGAGGAAGGAAGATGCTATTCCGACAGCATGGCTGAGCTGCCGGAGCACGAT
GAAGTAGCGAATGGCGAGAAGGTCCGGGCGATATCACTAGACCTGGTGAAGCGACGCCTC
GACAAGGGCCTCTACAAACGACTGGATCATTTTCAACAGGATATGTTTGCTGTTTTTGAA
CGCGCCCGCCGCCTCTCCCGCACGGACAGTCAGATATTCGAGGATTCAGTGGAACTTCAG
ACGTATTTCATCGACCAACGCGACCAGTTGTGTCGGAACACGCTGTCCTCGCCGGCGCTG
GCCATCACCAGGGACACGATAGCCACCAGCGTAGAACTGGTGAAGCAGTGCAAGCTGTTA
CAGGAAAACGACGAGGAGGAGGAGACGAGATCAAGTACCGAGGATACAATATCCGGTGCC
GCTCCGCCCTCGCAGTACGGTCGAGGCGACTTCGTGTACGCCCCCGCTAAGGGGAGCAAG
GAGCCTTCGATACTACAGATAGAGAAAATCGCCACGAACAGTGACAATGTACCCGTTATA
TACGCCAACGTATACTACAGGCCTCACGAGACCTTCCACGTGCGCACGCGCAAGTTCCTC
CAGCAGGAAGTGTTCAAGACGGACACTCACCGCACGGTTCCCTTGGACGCTATCATAGGG
ACCTGTTACGTCATGAACGTCAAGGAGTACTTCAAGTATAGACCGGAAGGTTACCTCGAC
AAAGATGTCTACGTCTGCGAGAGCCGTTACAACACGAAGCATCGATGGTTCAAGAAGATC
AAAGTGTGGGAGGGCGCTGAGAAGGAGGCCACTCTAGTGCCCAGAGAGGTGCCGCTAGAA
CCGAACAGAACGGTTTCAGTGTTCCGTGAAAGAGTCGAGAAACACAAGGACGAGCTGGCT
GAGCTAGAAGTGCTGGAAAATGTACAAGAAAAGGAACGACCTGACGTGGTCATGTACAAT
CCTCTGGGCACCGACGACGAGAACACTTATTACGAGCAATACAACACGGTGTGCTCGGGG
GTCATCAAGACGGGGGATTTTGTGTATGTGGTGACGGACGGCGGCAAGCAGATACTGGCG
CAGGTCGACACTATATGGGAGACAGGAGACAACAAATGTTATTTCCGCGGACCGTTTCTC
ATCTTCCCATCTGAAGTGTCGCACATCATAAACAAGCCATTCTACAAACAAGAGGTCCTA
TTGACCACAATGCACGATACTAGCCCACTCGTGGGAATAGTGGGCAAGTGTGCGGTGCTC
GATTACGACGATTACCTTAAATGTCGGCCGACAGAAATAGCGGAAGCGGATGTGTACGTG
TGCGAGTCGTTGTATGACGAGTCCAATAGACTGGCCAGGAAGTTGAAGTCGGGGCTGAGG
AAGTTCGAACACACCAAAGACGTTACCGTTGATGAGGTTTATTACTTCCCCAAGCCGCTG
GGCCCGCCGCCCCTCGCTTCGTCCCACGAGGTCCACACGTCCTTCACACAGAAGACCTTC
AATCCGAACGTTAACGCCGATTCCCTGGACGGCAAGCCTCAGTTCACCAACTTACTGAAC
ACAACCCTGGGCAGCCAGGACGTTGAACTGTTGTTGGAGAATTCATTGGACGACTCCTCA
CTAGCCTCACCGGCTACACCACTGTCTATAGGTGGCAACAGCAATCCATACAATCCATCG
ATGACGTCAAATCAAGAACGTTCCAGCACTACGACGGCAACACCGGCCAGCAGCAAGAAG
AAGAAGGAGCAGAAACAGAAGATTGTCACCGGATACATACTGTACTCGAGCGAAGTTAGG
AAGGCCATAGTAGCTAACAATCCTGAATCTACCTTCGGAGAGATATCTCGTATAGTTGGC
AACGAGTGGCGCTCACTCCCCGCCTCCACCAAACAGAGCTGGGAGGAGAGAGCGGCGCGC
TGTAACGAGGAGACATCCGCCAGGCTGGCCGAAGAGATGCGGGAGCTGTCGCAACATGTG
AGGACTACTGTACACACACACACACACACTCACGCACAAAAACATACCATACACATTGGA
ACATTTCCACACATGCACATTCTAAATTATATTTATATATATTAA
Protein sequence:
MFDNACKYNEPDSQIYKDALILQRVCLQTKQLLREDEDAVPDVAGAVQDLLLTLFTGVYN
HQDEEGRCYSDSMAELPEHDEVANGEKVRAISLDLVKRRLDKGLYKRLDHFQQDMFAVFE
RARRLSRTDSQIFEDSVELQTYFIDQRDQLCRNTLSSPALAITRDTIATSVELVKQCKLL
QENDEEEETRSSTEDTISGAAPPSQYGRGDFVYAPAKGSKEPSILQIEKIATNSDNVPVI
YANVYYRPHETFHVRTRKFLQQEVFKTDTHRTVPLDAIIGTCYVMNVKEYFKYRPEGYLD
KDVYVCESRYNTKHRWFKKIKVWEGAEKEATLVPREVPLEPNRTVSVFRERVEKHKDELA
ELEVLENVQEKERPDVVMYNPLGTDDENTYYEQYNTVCSGVIKTGDFVYVVTDGGKQILA
QVDTIWETGDNKCYFRGPFLIFPSEVSHIINKPFYKQEVLLTTMHDTSPLVGIVGKCAVL
DYDDYLKCRPTEIAEADVYVCESLYDESNRLARKLKSGLRKFEHTKDVTVDEVYYFPKPL
GPPPLASSHEVHTSFTQKTFNPNVNADSLDGKPQFTNLLNTTLGSQDVELLLENSLDDSS
LASPATPLSIGGNSNPYNPSMTSNQERSSTTTATPASSKKKKEQKQKIVTGYILYSSEVR
KAIVANNPESTFGEISRIVGNEWRSLPASTKQSWEERAARCNEETSARLAEEMRELSQHV
RTTVHTHTHTHAQKHTIHIGTFPHMHILNYIYIY