New model in OGS2.0 | DPOGS202947  |
---|---|
Genomic Position | scaffold222:+ 125577-128494 |
See gene structure | |
CDS Length | 1629 |
Paired RNAseq reads   | 14 |
Single RNAseq reads   | 50 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA005825 (2e-62) |
Best Drosophila hit   | I[[h]] channel, isoform I (2e-20) |
Best Human hit | potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 (1e-26) |
Best NR hit (blastp)   | PREDICTED: similar to hyperpolarization activated cyclic nucleotide-gated potassium channel [Nasonia vitripennis] (2e-48) |
Best NR hit (blastx)   | PREDICTED: similar to hyperpolarization activated cyclic nucleotide-gated potassium channel [Tribolium castaneum] (2e-40) |
GeneOntology terms    | GO:0005249 voltage-gated potassium channel activity GO:0016021 integral to membrane GO:0005272 sodium channel activity GO:0006811 ion transport GO:0030552 cAMP binding GO:0055085 transmembrane transport GO:0000166 nucleotide binding GO:0005244 voltage-gated ion channel activity GO:0016020 membrane GO:0005515 protein binding |
InterPro families    | IPR000595 Cyclic nucleotide-binding domain IPR014710 RmlC-like jelly roll fold IPR018490 Cyclic nucleotide-binding-like IPR013621 Ion transport N-terminal |
Orthology group | MCL40008 |
Nucleotide sequence:
ATGGAGAGTAAGCACATCTGTATGTTGCCGGCGCCAGCGTGTATGGACCTGCCGCCGACC
GCGGGCTGGTTGGGATGGCAGCTATGTAAGATAGGAAGTTGGATGTTGCCTTGCGAGTGG
CATTACGGGACGGCTTTTTACATACGGAGTAGGAAGAACTTGACCCTGGAGAGAGACAGA
CAGAGGAGCTCGGGCTCCTGGCTCGTCTGGCATCCCTACAGCCCCATCAAGTGCTACTGG
AATATTATATATCTGTTCCTCAATATGCTGGCATTCACTTACATGCCGTTCCAAGTATTT
TTCATTTGTAGGCTTAATGTTTTTGAGAACGTCGTCGTTGGTCAGACGGTAGTTATTGTT
GCAGGTCCCAACCCATACGACGCCTTCATTCTGTTCTGCGACCTGGTAGCGTTCCTGGAC
ATCTGCACCAAATTCATAACGGGCTACCACGACGAGGACAACAAGCTTATTGTGTTAGAC
AAGAAAATAATCGCGAAGGAATACATCCGCGGCACTTTCATTTTTGACTTGATCGGAGCG
TTGCCGTTACAACTGTATCAGCCGCACGAGAACTGTCAGTTTCCAACGCACACTGTGATG
TTCATGTTCAAACTGGCGAGACTGCCGTCGCTCCGGCAGAAGTGGCTGGAGATGTTCCAG
CAGCTGAGGTTTTCGTACGTGGCGAGCGTCGCTATCGCCGTGGTAGTGCGAGCTCTACTC
TTCTTCCACTGGATGACGTACATCCACTACCAAGTGCCGGCGTTCTTCTCTCACTACTAC
AACCGCGACAGCGTCTGGGCCAAGCGGTTCCACATGCCGATACCGAGCGAGGCGATCTTC
CAGGTGTACACCACCAGCTTATATTGGGTGTGCGGACTATGCGTCGGTGCGGGATATTTC
ATCCCAGTCGACGATTATATTATACCAGATCTATTGCTATCGTCAACCATCGGTATAATT
GGTCTGCTATTCCTTATATATTCATTCACGACTCTGCTCCGTCTGTTCATATACGGACAA
CACGAGAAATACTTGTACAACGGGAGACTGAAGGACCTCGAAGAATATATGAAGTTGAAG
CGGATACCGAAGAGTTTATACCGGAAGGTTCTGTTGTTCCTGAACTACAAATTCCACGGA
ACTTATTTCAACGAGGAGGCCATACTGAACACGATTAACGAACAGATCAAACAGGACATT
AACATGCACTTCTGCAAGAAGCTGGTCACGAACATACCGATCTTCCAGGATATGCCCGTG
GCGTTCGTCAATACAATCATATTTAATCTAACGCACGCCCTGTATATGCCGGGGGAGATC
GTGGTCTCGTGCGGGGAGAACGTCAACTGTTTGTACATGATCTCGTCTGGGACGGTCTCC
ATTTTGAATTCTGTTGGAAAGGAGTTAACTCATCTCCGAGACGGTGCGTACTTCGGCGAG
GACGCTCTCTACGACCCTGACAAGATACGAACCACCACCGTCCTCACCCTGGAGGTTACT
GAGATGTACAAGTTAACCAACGAGTCGTACCGGGCGTGTATCCGTCCCTACCCTCACCTG
GACGACCGGCTGAGAGCCAGCTCCGTGTACACCAGCAGACCCAACATTCGGACCAGGAAA
TACGACTAG
Protein sequence:
MESKHICMLPAPACMDLPPTAGWLGWQLCKIGSWMLPCEWHYGTAFYIRSRKNLTLERDR
QRSSGSWLVWHPYSPIKCYWNIIYLFLNMLAFTYMPFQVFFICRLNVFENVVVGQTVVIV
AGPNPYDAFILFCDLVAFLDICTKFITGYHDEDNKLIVLDKKIIAKEYIRGTFIFDLIGA
LPLQLYQPHENCQFPTHTVMFMFKLARLPSLRQKWLEMFQQLRFSYVASVAIAVVVRALL
FFHWMTYIHYQVPAFFSHYYNRDSVWAKRFHMPIPSEAIFQVYTTSLYWVCGLCVGAGYF
IPVDDYIIPDLLLSSTIGIIGLLFLIYSFTTLLRLFIYGQHEKYLYNGRLKDLEEYMKLK
RIPKSLYRKVLLFLNYKFHGTYFNEEAILNTINEQIKQDINMHFCKKLVTNIPIFQDMPV
AFVNTIIFNLTHALYMPGEIVVSCGENVNCLYMISSGTVSILNSVGKELTHLRDGAYFGE
DALYDPDKIRTTTVLTLEVTEMYKLTNESYRACIRPYPHLDDRLRASSVYTSRPNIRTRK
YD