| New model in OGS2.0 | DPOGS211816 |
|---|---|
| Genomic Position | scaffold9036:- 119-4169 |
| See gene structure | |
| CDS Length | 1113 |
| Paired RNAseq reads | 529 |
| Single RNAseq reads | 1869 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008155 (5e-67) |
| Best Drosophila hit | RhoGEF2, isoform D (3e-19) |
| Best Human hit | rho guanine nucleotide exchange factor 12 isoform 2 (1e-14) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC003069 [Tribolium castaneum] (3e-31) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC003069 [Tribolium castaneum] (1e-30) |
| GeneOntology terms | GO:0007377 germ-band extension GO:0007375 anterior midgut invagination GO:0016476 regulation of embryonic cell shape GO:0005089 Rho guanyl-nucleotide exchange factor activity GO:0007374 posterior midgut invagination GO:0007370 ventral furrow formation GO:0019992 diacylglycerol binding GO:0007369 gastrulation GO:0008360 regulation of cell shape GO:0035023 regulation of Rho protein signal transduction GO:0005515 protein binding GO:0050770 regulation of axonogenesis GO:0007015 actin filament organization GO:0007349 cellularization GO:0031532 actin cytoskeleton reorganization GO:0045179 apical cortex GO:0007277 pole cell development GO:0016328 lateral plasma membrane GO:0030478 actin cap GO:0045177 apical part of cell GO:0045178 basal part of cell GO:0016324 apical plasma membrane GO:0005826 actomyosin contractile ring GO:0016331 morphogenesis of embryonic epithelium GO:0035277 spiracle morphogenesis, open tracheal system GO:0030589 pseudocleavage involved in syncytial blastoderm formation GO:0090254 cell elongation involved in imaginal disc-derived wing morphogenesis |
| InterPro families | IPR015721 Rho GTP exchange factor IPR001478 PDZ/DHR/GLGF |
| Orthology group | MCL10325 |
Nucleotide sequence:
ATGCTGGGAGGGGCGGGGCCTGCGGGGGGCGACGACCTGCTCACCGTCACCGTCGTCAGG
GACGAGCACGGATATGGAATGAAGGTCTCAGGTGACAATCCAGTGTACGTGCAGTCGGTG
AAGGAGCACGGGGCCGCCTGGCGAGCTGGTCTCCGAGCCGGAGACCGCATCCTCAGGGTG
GACTGCGTGCCCGTTCACAAGTACGCTCACCAGCAGGTCGTCCACATGATCAGAGCGAAC
CCCAGCACGGTGTTGACCGTGCAGCAGAACACGTCCCGTCTGAAGACACCCATCACAGCT
CCCGTGCCGGTTAACTCCGAGAAGCAGCGGCAGTTGGAGGTGTCGAAGGCGCAGACTGTG
AGGCTGATGTTGGAACAGGAACAGAAATACATCCGGGACTTGAGAAATGACCTGCTCAAG
GTACCGGATGTGAGGAAACAGGCCCAGCTGGAGTCCGCGGAGCAGAGGTGCTCCATACTA
CAACACGAGATAGACACCATCATGGCCACACAGGTAAGACGCGAGCAGCGCCGGAGGATG
AGCCGGATGCCGCGCCGCTTCCCACTACTCCGAAGCTATCCCGGAAGTACCCCCACCCCC
ACCCCCACCACCACCGCCAACAAGCCGGCCAAGTACAAGAAATATCCCGCCCAGCCCTAT
TCCGCGGACAAGTTCCGGAGATCCTCCCACTCGCTGGACGGGGAGCTGGACGGCCCCGAA
CCCAACTCGATAGCCCTACAACTATACTACCCGCTGGTGAACGCCCCGCCGCCGCCGCTG
CTGGAGTCGTGTCCAGGTCTGTATGTAATGTCGATCCTCTCTCATCGCACAGAACGACAG
CCGCGGGTGTGTACCGGTGCTGCACGTGAGGAGCCAGTCGTCTCCGGAGCACCTGGACCA
CGAGCCGCGGAGTTTGTATACATTCCGTTACATTCATTCTCCATAATAAGTATTACGCTA
TTATTTTCTGGCACCTGTTCCTCAGCGAGCGCCCTGTCTCCGCCCGATAGTGAGTGTTGG
TCGGGCGGCTCTCCCCCGCTGGTGACTCCGCCCCCCGGGACCCCGCCGCCGCCCTATCAT
CACCCCACACAGGTACTACTATATAATATATAA
Protein sequence:
MLGGAGPAGGDDLLTVTVVRDEHGYGMKVSGDNPVYVQSVKEHGAAWRAGLRAGDRILRV
DCVPVHKYAHQQVVHMIRANPSTVLTVQQNTSRLKTPITAPVPVNSEKQRQLEVSKAQTV
RLMLEQEQKYIRDLRNDLLKVPDVRKQAQLESAEQRCSILQHEIDTIMATQVRREQRRRM
SRMPRRFPLLRSYPGSTPTPTPTTTANKPAKYKKYPAQPYSADKFRRSSHSLDGELDGPE
PNSIALQLYYPLVNAPPPPLLESCPGLYVMSILSHRTERQPRVCTGAAREEPVVSGAPGP
RAAEFVYIPLHSFSIISITLLFSGTCSSASALSPPDSECWSGGSPPLVTPPPGTPPPPYH
HPTQVLLYNI